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(-) Description

Title :  STRUCTURE OF THE MUTANT CATABOLITE GENE ACTIVATOR PROTEIN V140A
 
Authors :  E. Pohl, P. D. Townsend, T. Rodgers, D. Burnell, T. C. B. Mcleish, M. R. Wi M. J. Cann
Date :  16 Nov 12  (Deposition) - 30 Oct 13  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,E  (1x)
Biol. Unit 2:  B (1x),C (1x)
Biol. Unit 3:  D (1x),F (1x)
Keywords :  Dna Binding, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. L. Rodgers, P. D. Townsend, D. Burnell, M. L. Jones, S. A. Richards, T. C. Mcleish, E. Pohl, M. R. Wilson, M. J. Cann
Modulation Of Global Low-Frequency Motions Underlies Allosteric Regulation: Demonstration In Crp/Fnr Family Transcription Factors.
Plos Biol. V. 11 01651 2013
PubMed-ID: 24058293  |  Reference-DOI: 10.1371/JOURNAL.PBIO.1001651

(-) Compounds

Molecule 1 - CATABOLITE GENE ACTIVATOR
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CRP, CAP, CSM, B3357, JW5702
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12
    Synonym: CAMP RECEPTOR PROTEIN, CAMP REGULATORY PROTEIN

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A   E 
Biological Unit 2 (1x):  B (1x)C (1x)   
Biological Unit 3 (1x):    D (1x) F (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 9)

Asymmetric Unit (1, 9)
No.NameCountTypeFull Name
1CMP9Ligand/IonADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1CMP3Ligand/IonADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1CMP2Ligand/IonADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1CMP2Ligand/IonADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:31 , VAL A:50 , SER A:63 , ILE A:71 , GLY A:72 , GLU A:73 , LEU A:74 , ARG A:83 , SER A:84 , ALA A:85 , VAL A:87 , ARG A:124 , THR A:128 , HOH A:401 , HOH A:403 , HOH A:410 , LEU E:125 , SER E:129BINDING SITE FOR RESIDUE CMP A 301
2AC2SOFTWARELYS A:58 , GLU A:59 , GLN A:171 , GLY A:174 , GLN A:175 , GLY A:178 , CYS A:179 , SER A:180 , ARG A:181 , HOH A:500 , ALA E:136BINDING SITE FOR RESIDUE CMP A 302
3AC3SOFTWAREILE B:31 , VAL B:50 , SER B:63 , ILE B:71 , GLY B:72 , GLU B:73 , LEU B:74 , ARG B:83 , SER B:84 , ALA B:85 , THR B:128 , HOH B:402 , HOH B:419 , HOH B:420 , LEU C:125 , SER C:129BINDING SITE FOR RESIDUE CMP B 301
4AC4SOFTWARELYS B:58 , GLU B:59 , GLN B:171 , GLY B:174 , GLN B:175 , GLY B:178 , CYS B:179 , SER B:180 , ARG B:181 , ALA C:136BINDING SITE FOR RESIDUE CMP B 302
5AC5SOFTWARELEU B:125 , SER B:129 , ILE C:31 , VAL C:50 , LEU C:62 , SER C:63 , ILE C:71 , GLY C:72 , GLU C:73 , LEU C:74 , GLY C:75 , ARG C:83 , SER C:84 , ALA C:85 , VAL C:87 , ARG C:124 , THR C:128 , HOH C:402 , HOH C:406 , HOH C:420 , HOH C:527BINDING SITE FOR RESIDUE CMP C 301
6AC6SOFTWAREVAL D:50 , LEU D:62 , SER D:63 , ILE D:71 , GLY D:72 , GLU D:73 , LEU D:74 , ARG D:83 , SER D:84 , ALA D:85 , VAL D:87 , THR D:128 , HOH D:401 , HOH D:402 , LEU F:125 , SER F:129 , HOH F:422BINDING SITE FOR RESIDUE CMP D 301
7AC7SOFTWARELYS D:58 , GLU D:59 , GLN D:171 , GLY D:174 , GLN D:175 , GLY D:178 , CYS D:179 , SER D:180 , ARG D:181 , HOH D:492 , HOH D:512 , HOH D:547 , ALA F:136BINDING SITE FOR RESIDUE CMP D 302
8AC8SOFTWARELEU A:125 , SER A:129 , HOH A:432 , ILE E:31 , VAL E:50 , LEU E:62 , SER E:63 , ILE E:71 , GLY E:72 , GLU E:73 , LEU E:74 , ARG E:83 , SER E:84 , ALA E:85 , VAL E:87 , ARG E:124 , THR E:128 , HOH E:403 , HOH E:404 , HOH E:473BINDING SITE FOR RESIDUE CMP E 301
9AC9SOFTWARELEU D:125 , SER D:129 , ILE F:31 , VAL F:50 , LEU F:62 , SER F:63 , ILE F:71 , GLY F:72 , GLU F:73 , LEU F:74 , ARG F:83 , SER F:84 , ALA F:85 , VAL F:87 , ARG F:124 , THR F:128 , HOH F:403 , HOH F:405 , HOH F:433BINDING SITE FOR RESIDUE CMP F 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4I02)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4I02)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4I02)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4I02)

(-) Exons   (0, 0)

(no "Exon" information available for 4I02)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:204
                                                                                                                                                                                                                                            
               SCOP domains d4i02a1 A:3-138 automated matches                                                                                                       d4i02a2 A:139-209 automated matches                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhh.eeeee....eee.......eeeeeee.eeeeeee.....eeeeeeee...ee..............eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee..eeee..hhhhhhhhhh.hhhhhhhhhhhhhhh..ee..eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4i02 A   3 LGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDATGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISATIVVYGT 209
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192      |205    
                                                                                                                                                                                                                              199|      
                                                                                                                                                                                                                               203      


Chain B from PDB  Type:PROTEIN  Length:206
                                                                                                                                                                                                                                              
               SCOP domains d4i02b1 B:1-138 automated matches                                                                                                         d4i02b2 B:139-209 automated matches                                  SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.....hhhhhhhhhh.eeeee....eee.......eeeeeee.eeeeeee.....eeeeeeee...ee..............eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee..eeee..hhhhhhhhhh.hhhhhhhhhhhhhhh..ee..eeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i02 B   1 MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDATGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISATIVVYGT 209
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       203      
                                                                                                                                                                                                                                199|      
                                                                                                                                                                                                                                 203      


Chain C from PDB  Type:PROTEIN  Length:201
                                                                                                                                                                                                                                         
               SCOP domains d4i02c1 C:9-138 automated matches                                                                                                 d4i02c2 C:139-209 automated matches                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.eeeee....eee.......eeeeeee..eeeeee.....eeeeeee....ee..............eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee..eeeee.hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i02 C   9 DPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDATGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGT 209
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208 


Chain D from PDB  Type:PROTEIN  Length:207
                                                                                                                                                                                                                                               
               SCOP domains d4i02d1 D:1-138 automated matches                                                                                                         d4i02d2 D:139-209 automated matches                                   SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.....hhhhhhhhhh.eeeee....eee.......eeeeeee..eeeeee.....eeeeeee....ee..............eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee..eeee..hhhhhhhhhh.hhhhhhhhhhhhhhh..ee...eeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i02 D   1 MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDATGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHTIVVYGT 209
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200|      
                                                                                                                                                                                                                                 200|      
                                                                                                                                                                                                                                  203      


Chain E from PDB  Type:PROTEIN  Length:201
                                                                                                                                                                                                                                         
               SCOP domains d4i02e1 E:9-138 automated matches                                                                                                 d4i02e2 E:139-209 automated matches                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.eeeee....eee.......eeeeeee..eeeeee.....eeeeeee....ee..............eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee..eeeee.hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i02 E   9 DPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDATGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGT 209
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208 


Chain F from PDB  Type:PROTEIN  Length:201
                                                                                                                                                                                                                                         
               SCOP domains d4i02f1 F:9-138 automated matches                                                                                                 d4i02f2 F:139-209 automated matches                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.eeeee....eee.......eeeeeee..eeeeee.....eeeeeee....ee..............eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee..eeeee.hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i02 F   9 DPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDATGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGT 209
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4I02)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4I02)

(-) Gene Ontology  (12, 12)

Asymmetric Unit(hide GO term definitions)

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  4i02
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CRP_ECOLI | P0ACJ8: 1cgp 1g6n 1hw5 1i5z 1i6x 1j59 1lb2 1o3q 1o3r 1o3s 1o3t 1run 1ruo 1zrc 1zrd 1zre 1zrf 2cgp 2gap 2gzw 2wc2 3fwe 3hif 3iyd 3kcc 3n4m 3qop 3rdi 3rou 3rpq 3ryp 3ryr 4bh9 4bhp 4ft8 4hzf 4i01 4i09 4i0a 4i0b 4r8h 5ciz

(-) Related Entries Specified in the PDB File

4hzf 4i09 4i0a 4i0b 4io1