4HZF - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   STRUCTURE OF THE WILD TYPE CATABOLITE GENE ACTIVATOR PROTEIN

Authors :   E. Pohl, P. D. Townsend, T. Rodgers, D. Burnell, T. C. B. Mcleish, M. R. Wi M. Cann

Date :   15 Nov 12 (Deposition) - 30 Oct 13 (Release) - 30 Oct 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.48

Chains :   Asym./Biol. Unit : A,B

Keywords :   Cap Dimer, Dna Binding, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. L. Rodgers, P. D. Townsend, D. Burnell, M. L. Jones, S. A. Richards, T. C. Mcleish, E. Pohl, M. R. Wilson, M. J. Cann
Modulation Of Global Low-Frequency Motions Underlies Allosteric Regulation: Demonstration In Crp/Fnr Family Transcription Factors.
Plos Biol. V. 11 01651 2013
PubMed-ID: 24058293 | Reference-DOI: 10.1371/JOURNAL.PBIO.1001651

Molecule 1 - CATABOLITE GENE ACTIVATOR
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	CRP, CAP, CSM, B3357, JW5702
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	83333
	Strain	:	K12
	Synonym	:	CAMP RECEPTOR PROTEIN, CAMP REGULATORY PROTEIN

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 11)

No.	Name	Count	Type	Full Name
1	CMP	3	Ligand/Ion	ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
2	GOL	6	Ligand/Ion	GLYCEROL
3	PO4	2	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	VAL A:50 , SER A:63 , ILE A:71 , GLY A:72 , GLU A:73 , LEU A:74 , ARG A:83 , SER A:84 , ALA A:85 , ARG A:124 , THR A:128 , HOH A:401 , HOH A:403 , HOH A:407 , LEU B:125 , SER B:129	BINDING SITE FOR RESIDUE CMP A 301
02	AC2	SOFTWARE	LYS A:58 , GLU A:59 , GLN A:171 , GLY A:174 , GLN A:175 , GLY A:178 , CYS A:179 , SER A:180 , ARG A:181 , HOH A:499 , ALA B:136	BINDING SITE FOR RESIDUE CMP A 302
03	AC3	SOFTWARE	LEU A:106 , HOH A:487 , ASP B:139	BINDING SITE FOR RESIDUE PO4 A 303
04	AC4	SOFTWARE	TYR A:64 , LYS A:131 , ASN A:150 , GOL A:306	BINDING SITE FOR RESIDUE GOL A 304
05	AC5	SOFTWARE	LEU A:65 , ASP A:69 , GLN A:120 , ARG A:124 , HOH A:412 , HOH A:445	BINDING SITE FOR RESIDUE GOL A 305
06	AC6	SOFTWARE	LYS A:131 , ASN A:134 , THR A:147 , ILE A:176 , GOL A:304	BINDING SITE FOR RESIDUE GOL A 306
07	AC7	SOFTWARE	LEU A:125 , SER A:129 , VAL B:50 , SER B:63 , ILE B:71 , GLY B:72 , GLU B:73 , LEU B:74 , ARG B:83 , SER B:84 , ALA B:85 , VAL B:87 , ARG B:124 , THR B:128 , HOH B:405 , HOH B:406 , HOH B:425	BINDING SITE FOR RESIDUE CMP B 301
08	AC8	SOFTWARE	ALA B:145 , LEU B:149 , LEU B:196 , HOH B:434	BINDING SITE FOR RESIDUE PO4 B 302
09	AC9	SOFTWARE	CYS B:179 , SER B:180 , ARG B:181 , HOH B:489 , HOH B:531 , HOH B:546	BINDING SITE FOR RESIDUE GOL B 303
10	BC1	SOFTWARE	LYS B:131 , ASN B:150 , GLN B:154 , HOH B:476	BINDING SITE FOR RESIDUE GOL B 304
11	BC2	SOFTWARE	ARG A:104 , GLN A:108 , MET B:190 , ASP B:193	BINDING SITE FOR RESIDUE GOL B 305

(no "SS Bond" information available for 4HZF)

(no "Cis Peptide Bond" information available for 4HZF)

(no "SAP(SNP)/Variant" information available for 4HZF)

(no "PROSITE Motif" information available for 4HZF)

(no "Exon" information available for 4HZF)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:200
                                                                                                                                                                                                                                        
               SCOP domains d4hzfa1 A:9-138 automated matches                                                                                                 d4hzfa2 A:139-208 automated matches                                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh.eeeee....eee.......eeeeeee.eeeeeee.....eeeeeeee...ee..............eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee..eeeee.hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee..eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hzf A   9 DPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYG 208
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208

Chain B from PDB  Type:PROTEIN  Length:200
                                                                                                                                                                                                                                        
               SCOP domains d4hzfb1 B:10-138 automated matches                                                                                               d4hzfb2 B:139-209 automated matches                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh.eeeee....eee.......eeeeeee.eeeeeee.....eeeeeeee...eehhhhh.........eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee...eeee..hhhhhhhhhh.hhhhhhhhhhhhhhh..ee.....eeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hzf B  10 PTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGT 209
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: DNA/RNA-binding 3-helical bundle (1299)

Superfamily: Winged helix DNA-binding domain (576)

Family: automated matches (118)

Protein domain: automated matches (118)

Escherichia coli K-12 [TaxId: 83333] (13)

1a	d4hzfa2	A:139-208
1b	d4hzfb2	B:139-209

Class: All beta proteins (24004)

Fold: Double-stranded beta-helix (580)

Superfamily: cAMP-binding domain-like (99)

Family: cAMP-binding domain (78)

Protein domain: automated matches (22)

Escherichia coli K-12 [TaxId: 83333] (7)

2a	d4hzfa1	A:9-138
2b	d4hzfb1	B:10-138

(no "CATH Domain" information available for 4HZF)

(no "Pfam Domain" information available for 4HZF)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4hzf)

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	4hzf
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 11)

Sites (11, 11)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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SCOP Domains (2, 4)

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Gene Ontology (12, 12)

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