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(-) Description

Title :  PYRIDINYLPYRIMIDINES SELECTIVELY INHIBIT HUMAN METHIONINE AMINOPEPTIDASE-1
 
Authors :  S. B. Gabelli, F. Zhang, J. Liu, L. M. Amzel
Date :  12 Nov 12  (Deposition) - 03 Apr 13  (Release) - 02 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.09
Chains :  Asym./Biol. Unit :  A
Keywords :  Aminopeptidases, Pyrimidines, Pyrimidyl Group, Pyridinylpyrimidine, Cell Cycle, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. Zhang, X. Yang, F. Zhang, S. B. Gabelli, R. Wang, Y. Zhang, S. Bhat, X. Chen, M. Furlani, L. M. Amzel, J. O. Liu, D. Ma
Pyridinylpyrimidines Selectively Inhibit Human Methionine Aminopeptidase-1.
Bioorg. Med. Chem. V. 21 2600 2013
PubMed-ID: 23507151  |  Reference-DOI: 10.1016/J.BMC.2013.02.023

(-) Compounds

Molecule 1 - METHIONINE AMINOPEPTIDASE 1
    ChainsA
    EC Number3.4.11.18
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 81-384
    GeneKIAA0094, METAP1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    StrainBL21
    SynonymMAP 1, METAP 1, PEPTIDASE M 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric/Biological Unit (4, 7)
No.NameCountTypeFull Name
11AY1Ligand/Ion(1R)-N~2~-[5-CHLORO-2-(5-CHLOROPYRIDIN-2-YL)-6-METHYLPYRIMIDIN-4-YL]-1-PHENYL-N~1~-(4-PHENYLBUTYL)ETHANE-1,2-DIAMINE
2CO3Ligand/IonCOBALT (II) ION
3K1Ligand/IonPOTASSIUM ION
4SO42Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:240 , HIS A:303 , GLU A:336 , GLU A:367 , CO A:402BINDING SITE FOR RESIDUE CO A 401
2AC2SOFTWAREASP A:229 , ASP A:240 , GLU A:367 , CO A:401 , HOH A:506BINDING SITE FOR RESIDUE CO A 402
3AC3SOFTWAREHIS A:212 , 1AY A:405 , HOH A:524 , HOH A:568 , HOH A:587BINDING SITE FOR RESIDUE CO A 403
4AC4SOFTWARESER A:205 , VAL A:206 , ASN A:207 , VAL A:209 , SER A:363 , HOH A:508BINDING SITE FOR RESIDUE K A 404
5AC5SOFTWARETYR A:195 , PHE A:198 , HIS A:212 , CYS A:301 , HIS A:310 , GLU A:336 , TRP A:353 , CO A:403 , HOH A:587BINDING SITE FOR RESIDUE 1AY A 405
6AC6SOFTWARELYS A:95 , LEU A:96 , ARG A:97 , HIS A:99 , ARG A:218 , GLN A:221 , HOH A:565BINDING SITE FOR RESIDUE SO4 A 406
7AC7SOFTWAREARG A:234 , GLN A:286 , HOH A:511 , HOH A:545BINDING SITE FOR RESIDUE SO4 A 407

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HXX)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Tyr A:100 -Pro A:101
2Ala A:312 -Pro A:313

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HXX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HXX)

(-) Exons   (0, 0)

(no "Exon" information available for 4HXX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........................hhhhh.....hhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh..ee...hhhhh....eeee..eee.............eeeeeeeeee..eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..ee.....eee......eeeee................eeee..eee.....eee......eee.....eee..eeeee....eee.........hhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hxx A  90 YRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTRRLDSARPHFMS 393
                                    99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389    

   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HXX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HXX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HXX)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MAP11_HUMAN | P535822b3h 2b3k 2b3l 2g6p 2gz5 2nq6 2nq7 4fli 4flj 4flk 4fll 4ikr 4iks 4ikt 4iku 4iu6 4u1b 4u69 4u6c 4u6e 4u6j 4u6w 4u6z 4u70 4u71 4u73 4u75 4u76

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4HXX)