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(-) Description

Title :  CRYSTAL STRUCTURE OF H. VOLCANII SMALL ARCHAEAL MODIFIER PROTEIN 1
 
Authors :  B. Hao
Date :  28 Oct 12  (Deposition) - 30 Oct 13  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.15
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Beta-Grasp, Small Ubiquitin-Like Modifier, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Y. Li, M. W. Maciejewski, K. Jin, J. Martin, Y. Zhang, M. Lu, J. A. Maupin-Furlow, B. Hao
Crystal Structure Of H. Volcanii Small Archaeal Modifier Protein 1
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SMALL ARCHAEAL MODIFIER PROTEIN 1
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET15B
    Expression System StrainBL21
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneHVO_2619
    Organism ScientificHALOFERAX VOLCANII DS2
    Organism Taxid309800
    StrainDS70
    SynonymSAMP 1, UBIQUITIN-LIKE SMALL ARCHAEAL MODIFIER PROTEIN 1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric Unit (1, 5)
No.NameCountTypeFull Name
1CA5Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:77 , HOH A:312 , GLY B:75 , HOH B:214 , HOH B:225BINDING SITE FOR RESIDUE CA A 101
2AC2SOFTWAREGLY A:24 , THR A:72 , HOH A:218 , HOH A:219 , HOH A:228 , HOH A:248 , HOH A:258BINDING SITE FOR RESIDUE CA A 102
3AC3SOFTWAREASP A:49 , ASP B:49 , HOH B:265BINDING SITE FOR RESIDUE CA A 103
4AC4SOFTWAREGLY B:14 , SER B:15 , GLU B:64 , GLU B:70 , HOH B:201 , HOH B:209 , HOH B:314BINDING SITE FOR RESIDUE CA B 101
5AC5SOFTWAREGLY B:24 , THR B:72 , HOH B:247 , HOH B:252 , HOH B:272 , HOH B:294 , HOH B:319BINDING SITE FOR RESIDUE CA B 102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HRO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HRO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HRO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HRO)

(-) Exons   (0, 0)

(no "Exon" information available for 4HRO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:87
                                                                                                                      
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeehhhhhhhhh..eeeeee....hhhhhhhhhhhhh..hhhhhh..........eeee..ee...........eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                  4hro A -2 GAHMEWKLFADLAEVAGSRTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEATAAGDELALFPPV 84
                                     7        17        27        37        47        57        67        77       

Chain B from PDB  Type:PROTEIN  Length:88
                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeehhhhhhhhh..eeeeee....hhhhhhhhhhhhh..hhhhhh..........eeee..ee...........eeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  4hro B -2 GAHMEWKLFADLAEVAGSRTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEATAAGDELALFPPVS 85
                                     7        17        27        37        47        57        67        77        

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HRO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HRO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HRO)

(-) Gene Ontology  (3, 3)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SAMP1_HALVD | D4GUF62l83 3po0

(-) Related Entries Specified in the PDB File

3po0 THE SAME PROTEIN WITH A LOWER RESOLUTION
4hro THE PROTEIN FROM THE SAME FAMILY