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(-) Description

Title :  ALPHA7 NICOTINIC RECEPTOR CHIMERA AND ITS COMPLEX WITH ALPHA BUNGAROTOXIN
 
Authors :  S. X. Li, K. Cheng, R. Gomoto, N. Bren, S. Huang, S. Sine, L. Chen
Date :  25 Oct 12  (Deposition) - 17 Jul 13  (Release) - 17 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.51
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J
Keywords :  Protein-Protein Complex, Nicotinic Receptor, Membrane, Nachr, A- Bungarotoxin, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. X. Li, K. Cheng, R. Gomoto, N. Bren, S. Huang, S. Sine, L. Chen
Structural Principles For Alpha-Neurotoxin Binding To And Selectivity Among Nicotinic Receptors
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ALPHA7 NICOTINIC RECEPTOR CHIMERA
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: PICHIA PASTORIS
    Expression System Taxid: 4922
    Organism Common: HUMAN, GREAT POND SNAIL
    Organism Scientific: HOMO SAPIENS, LYMNAEA STAGNALIS
    Organism Taxid: 9606, 6523
 
Molecule 2 - ALPHA-BUNGAROTOXIN ISOFORM V31
    Chains: F, G, H, I, J
    Organ: VENOM
    Organism Common: MANY-BANDED KRAIT
    Organism Scientific: BUNGARUS MULTICINCTUS
    Organism Taxid: 8616
    Synonym: ALPHA-BTX V31, ALPHA-BGT(V31), BGTX V31, LONG NEUROTOXIN 1

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric/Biological Unit : ABCDEFGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric/Biological Unit (1, 8)
No.NameCountTypeFull Name
1NAG8Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:66 , SER A:68 , GLU A:69BINDING SITE FOR RESIDUE NAG A 801
2AC2SOFTWAREASN A:108 , SER A:110 , HIS A:112BINDING SITE FOR RESIDUE NAG A 802
3AC3SOFTWAREASN B:66 , SER B:68 , GLU B:69 , NAG B:802BINDING SITE FOR RESIDUE NAG B 801
4AC4SOFTWARENAG B:801 , GLN E:157BINDING SITE FOR RESIDUE NAG B 802
5AC5SOFTWAREASN B:108 , SER B:110 , HIS B:112BINDING SITE FOR RESIDUE NAG B 803
6AC6SOFTWAREASN C:66 , SER C:68 , GLU C:69 , ASN J:21BINDING SITE FOR RESIDUE NAG C 801
7AC7SOFTWAREASN C:108 , SER C:109 , SER C:110 , HIS C:112BINDING SITE FOR RESIDUE NAG C 802
8AC8SOFTWAREASN D:66 , SER D:68 , GLU D:69BINDING SITE FOR RESIDUE NAG D 801

(-) SS Bonds  (40, 40)

Asymmetric/Biological Unit
No.Residues
1A:125 -A:138
2A:186 -A:187
3B:125 -B:138
4B:186 -B:187
5C:125 -C:138
6C:186 -C:187
7D:125 -D:138
8D:186 -D:187
9E:125 -E:138
10E:186 -E:187
11F:3 -F:23
12F:3 -F:16
13F:16 -F:44
14F:29 -F:33
15F:48 -F:59
16F:60 -F:65
17G:3 -G:16
18G:3 -G:23
19G:16 -G:44
20G:29 -G:33
21G:48 -G:59
22G:60 -G:65
23H:3 -H:16
24H:3 -H:23
25H:16 -H:44
26H:29 -H:33
27H:48 -H:59
28H:60 -H:65
29I:3 -I:16
30I:3 -I:23
31I:16 -I:44
32I:29 -I:33
33I:48 -I:59
34I:60 -I:65
35J:3 -J:16
36J:3 -J:23
37J:16 -J:44
38J:29 -J:33
39J:48 -J:59
40J:60 -J:65

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Ser F:9 -Pro F:10
2Ser G:9 -Pro G:10
3Ser H:9 -Pro H:10
4Ser I:9 -Pro I:10
5Ser J:9 -Pro J:10

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HQP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HQP)

(-) Exons   (0, 0)

(no "Exon" information available for 4HQP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh...............eeeeeeeeeeeeeeee....eeeeeeeeeeeee...............eeeee.........ee.......ee....eeeee...eeee..eeeeeee..hhhhh....eeeeeeee........eeeee...hhhhh.....eeeeeeeeeee..ee........eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hqp A   3 QRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG 204
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202  


Chain B from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh...............eeeeeeeeeeeeeeee....eeeeeeeeeeeee...............eeeee.........ee.......ee....eeeee...eeee..eeeeeee..hhhhh....eeeeeeee........eeee..............eeeeeeeeeee..ee........eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hqp B   3 QRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG 204
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202  


Chain C from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh...............eeeeeeeeeeeeeeee....eeeeeeeeeeeee...............eeeee........eee.......ee....eeeee...eeee..eeeeeee..hhhhh....eeeeeeeee.......eeee..............eeeeeeeeeee............eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hqp C   3 QRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG 204
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202  


Chain D from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh...............eeeeeeeeeeeeeeee....eeeeeeeeeeeee...............eeeee........eee.......ee....eeeee...eeee..eeeeeee..hhhhh....eeeeeeeee.......eeee..............eeeeeeeeeee..ee........eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hqp D   3 QRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG 204
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202  


Chain E from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh...............eeeeeeeeeeeeeeee....eeeeeeeeeeeee...............eeeee........eee.......ee....eeeee...eeee..eeeeeee..hhhhh....eeeeeeeee.......eeeee.............eeeeeeeeeee............eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hqp E   3 QRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG 204
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202  


Chain F from PDB  Type:PROTEIN  Length:73
                                                                                                         
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeee...hhhhh....eeeeee.............ee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                 4hqp F   1 IVCHTTATSPISAVTCPPGENLCYRKMWCDVFCSSRGKVVELGCAATCPSKKPYEEVTCCSTDKCNPHPKQRP  73
                                    10        20        30        40        50        60        70   


Chain G from PDB  Type:PROTEIN  Length:73
                                                                                                         
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeee...hhhhh...eeeeeee.............ee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                 4hqp G   1 IVCHTTATSPISAVTCPPGENLCYRKMWCDVFCSSRGKVVELGCAATCPSKKPYEEVTCCSTDKCNPHPKQRP  73
                                    10        20        30        40        50        60        70   


Chain H from PDB  Type:PROTEIN  Length:73
                                                                                                         
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeee...hhhhh...eeeeeee.............ee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                 4hqp H   1 IVCHTTATSPISAVTCPPGENLCYRKMWCDVFCSSRGKVVELGCAATCPSKKPYEEVTCCSTDKCNPHPKQRP  73
                                    10        20        30        40        50        60        70   


Chain I from PDB  Type:PROTEIN  Length:73
                                                                                                         
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeee...hhhhh...eeeeeee.............ee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                 4hqp I   1 IVCHTTATSPISAVTCPPGENLCYRKMWCDVFCSSRGKVVELGCAATCPSKKPYEEVTCCSTDKCNPHPKQRP  73
                                    10        20        30        40        50        60        70   


Chain J from PDB  Type:PROTEIN  Length:73
                                                                                                         
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeee...hhhhh....eeeeee.............ee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                 4hqp J   1 IVCHTTATSPISAVTCPPGENLCYRKMWCDVFCSSRGKVVELGCAATCPSKKPYEEVTCCSTDKCNPHPKQRP  73
                                    10        20        30        40        50        60        70
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HQP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HQP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HQP)

(-) Gene Ontology  (11, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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  4hqp
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  ACHP_LYMST | P58154
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        3L21V_BUNMU | P60616: 1haa 1haj 1hc9 1lk1 2qc1 4uy2 5hbt 5hbv
        ACHP_LYMST | P58154: 1i9b 1uv6 1uw6 1ux2 1yi5 2zju 2zjv 3u8j 3u8k 3u8l 3u8m 3u8n 3wip 3wth 3wti 3wtj 3wtk 3wtl 3wtm 3wtn 3wto 3zdg 3zdh 4alx 4nzb 4qaa 4qab 4qac 4um1 4um3 4zjt 4zk1 4zr6 4zru 5afh 5afj 5afk 5afl 5afm 5afn 5bp0 5j5f 5j5g 5j5h 5j5i 5t90

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4HQP)