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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ATG17-ATG31-ATG29 COMPLEX
 
Authors :  R. E Stanley, M. J Ragusa, J. H Hurley
Date :  24 Oct 12  (Deposition) - 26 Dec 12  (Release) - 09 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.06
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Autophagy, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. Ragusa, R. E. Stanley, J. H. Hurley
Architecture Of The Atg17 Complex As A Scaffold For Autophagosome Biogenesis.
Cell(Cambridge, Mass. ) V. 151 1501 2012
PubMed-ID: 23219485  |  Reference-DOI: 10.1016/J.CELL.2012.11.028

(-) Compounds

Molecule 1 - ATG31
    Chains: A, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PST39
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: ATG31
    Gene: ATG31, KLTH0C07942G
    Mutation: YES
    Organism Common: YEAST
    Organism Scientific: LACHANCEA THERMOTOLERANS CBS 6340
    Organism Taxid: 559295
    Strain: ATCC 56472 / CBS 6340 / NRRL Y-8284
    Synonym: KLTH0C07942P
 
Molecule 2 - ATG29
    Chains: B, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PST39
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: ATG29, UNP RESIDUES 1-86
    Gene: ATG29, KLTH0D11660G
    Organism Common: YEAST
    Organism Scientific: LACHANCEA THERMOTOLERANS CBS 6340
    Organism Taxid: 559295
    Strain: ATCC 56472 / CBS 6340 / NRRL Y-8284
    Synonym: KLTH0D11660P
 
Molecule 3 - ATG17
    Chains: C, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PST39
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ATG17, KLTH0D15642G
    Organism Common: YEAST
    Organism Scientific: LACHANCEA THERMOTOLERANS CBS 6340
    Organism Taxid: 559295
    Strain: ATCC 56472 / CBS 6340 / NRRL Y-8284
    Synonym: KLTH0D15642P

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 58)

Asymmetric/Biological Unit (1, 58)
No.NameCountTypeFull Name
1UNK58Mod. Amino Acid

(-) Sites  (0, 0)

(no "Site" information available for 4HPQ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HPQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HPQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HPQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HPQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4HPQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:69
                                                                                                     
               SCOP domains --------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee................hhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 4hpq A   1 MNSENTIVYVRVAGRARNGFVDPLKFYWDLERDRSLWSSVxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  79
                                    10        20        30        40||||||||60||||||||70|||||||||
                                                                  40|||||||59-UNK|||68-UNK|||77-UNK
                                                                   51-UNK|||60-UNK|||69-UNK|||78-UNK
                                                                    52-UNK|| 61-UNK|| 70-UNK|| 79-UNK
                                                                     53-UNK|  62-UNK|  71-UNK|   
                                                                      54-UNK   63-UNK   72-UNK   
                                                                       55-UNK   64-UNK   73-UNK  
                                                                        56-UNK   65-UNK   74-UNK 
                                                                         57-UNK   66-UNK   75-UNK
                                                                          58-UNK   67-UNK   76-UNK


Chain B from PDB  Type:PROTEIN  Length:115
                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.........eee...eeee...........eeeeee........eeeeee...ee...eee...eeeeeee............hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 4hpq B  11 EPFTVTVVDRNVKHQVQGVMFATNVKYIFEDDQEDPAIENVVIIEADESLRVTQVEMISDQFKQVGYEVRDGNEVCIDAMSRFETPRQLGNLPLEKLVQLYKLQNDQLHSLFNTL 145
                                    20    ||  44        54   ||   70        80        90       100       110       120       130       140     
                                         25|                58|                                                                                
                                          40                 65                                                                                


Chain C from PDB  Type:PROTEIN  Length:396
                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhhhhh......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh.............ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hpq C   2 NEAVIEKLLENSRKFLTGAKLICQESNDHLTTTKLRIREWQKFQSKLHFVLDCIQQQTKFLSEILLREGIGRNLIEEEWSQTVLVRLVNDMKFWQNEITKMMNKLDNITNEIDQQHNSKLGDFISRDSSHILDSKLNEIPTIRKQVENITRQYQTMLAKVQSQLVESRMKGLRDEFSEEFTNEADQLEQELADFLKSFTDHFDKCSALSSRSVSPEDAQNLFEIVERDDKDLAAINSLLQDAAIDVASFVRKVNMLLDERDADKAKMQATLSKLLTELRKHEEYISVFEGISALIQKFKASCLEDIRQTRNLLDFYANFERSYHNLLKEVKRRKETAAKLSQILKSCETQLEQINTADLRERQMFLLENGNYLPETIWPDEIGSLSPLYTLNYEVR 411
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171      |195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405      
                                                                                                                                                                                                          178|                                                                                                                                                                                                                          
                                                                                                                                                                                                           193                                                                                                                                                                                                                          


Chain D from PDB  Type:PROTEIN  Length:69
                                                                                                     
               SCOP domains --------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee................hhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 4hpq D   1 MNSENTIVYVRVAGRARNGFVDPLKFYWDLERDRSLWSSVxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  79
                                    10        20        30        40||||||||60||||||||70|||||||||
                                                                  40|||||||59-UNK|||68-UNK|||77-UNK
                                                                   51-UNK|||60-UNK|||69-UNK|||78-UNK
                                                                    52-UNK|| 61-UNK|| 70-UNK|| 79-UNK
                                                                     53-UNK|  62-UNK|  71-UNK|   
                                                                      54-UNK   63-UNK   72-UNK   
                                                                       55-UNK   64-UNK   73-UNK  
                                                                        56-UNK   65-UNK   74-UNK 
                                                                         57-UNK   66-UNK   75-UNK
                                                                          58-UNK   67-UNK   76-UNK


Chain E from PDB  Type:PROTEIN  Length:115
                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.........eee...eeee...........eeeeee........eeeeee...ee...eee...eeeeeee............hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 4hpq E  11 EPFTVTVVDRNVKHQVQGVMFATNVKYIFEDDQEDPAIENVVIIEADESLRVTQVEMISDQFKQVGYEVRDGNEVCIDAMSRFETPRQLGNLPLEKLVQLYKLQNDQLHSLFNTL 145
                                    20    ||  44        54   ||   70        80        90       100       110       120       130       140     
                                         25|                58|                                                                                
                                          40                 65                                                                                


Chain F from PDB  Type:PROTEIN  Length:396
                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhhhhh......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh............ee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hpq F   2 NEAVIEKLLENSRKFLTGAKLICQESNDHLTTTKLRIREWQKFQSKLHFVLDCIQQQTKFLSEILLREGIGRNLIEEEWSQTVLVRLVNDMKFWQNEITKMMNKLDNITNEIDQQHNSKLGDFISRDSSHILDSKLNEIPTIRKQVENITRQYQTMLAKVQSQLVESRMKGLRDEFSEEFTNEADQLEQELADFLKSFTDHFDKCSALSSRSVSPEDAQNLFEIVERDDKDLAAINSLLQDAAIDVASFVRKVNMLLDERDADKAKMQATLSKLLTELRKHEEYISVFEGISALIQKFKASCLEDIRQTRNLLDFYANFERSYHNLLKEVKRRKETAAKLSQILKSCETQLEQINTADLRERQMFLLENGNYLPETIWPDEIGSLSPLYTLNYEVR 411
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171      |195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405      
                                                                                                                                                                                                          178|                                                                                                                                                                                                                          
                                                                                                                                                                                                           193
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HPQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HPQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HPQ)

(-) Gene Ontology  (16, 23)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        C5DEB9_LACTC | C5DEB9: 4p1w 5jhf
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(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4HPQ)