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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN MUSCLE FRUCTOSE-1,6-BISPHOSPHATASE Q32R MUTANT COMPLEX WITH AMP
 
Authors :  R. Shi, D. W. Zhu, S. X. Lin
Date :  03 Oct 12  (Deposition) - 09 Oct 13  (Release) - 09 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Allosteric Enzyme, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Shi, Z. Y. Chen, D. W. Zhu, C. Li, Y. Shan, G. Xu, S. X. Lin
Crystal Structures Of Human Muscle Fructose-1, 6-Bisphosphatase: Novel Quaternary States, Enhanced Amp Affinity, And Allosteric Signal Transmission Pathway.
Plos One V. 8 71242 2013
PubMed-ID: 24086250  |  Reference-DOI: 10.1371/JOURNAL.PONE.0071242

(-) Compounds

Molecule 1 - FRUCTOSE-1,6-BISPHOSPHATASE ISOZYME 2
    Chains: A
    EC Number: 3.1.3.11
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PKK223-3
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: FBP2
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FBPASE 2, D-FRUCTOSE-1,6-BISPHOSPHATE 1-PHOSPHOHYDROLASE 2

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 7)

Asymmetric Unit (5, 7)
No.NameCountTypeFull Name
1AMP1Ligand/IonADENOSINE MONOPHOSPHATE
2CL1Ligand/IonCHLORIDE ION
3MG3Ligand/IonMAGNESIUM ION
4PO31Ligand/IonPHOSPHITE ION
5ZN1Ligand/IonZINC ION
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1AMP4Ligand/IonADENOSINE MONOPHOSPHATE
2CL-1Ligand/IonCHLORIDE ION
3MG-1Ligand/IonMAGNESIUM ION
4PO34Ligand/IonPHOSPHITE ION
5ZN-1Ligand/IonZINC ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:17 , LYS A:20 , GLY A:21 , ALA A:24 , THR A:27 , GLY A:28 , GLU A:29 , LEU A:30 , THR A:31 , LYS A:112 , TYR A:113 , VAL A:160 , THR A:177 , HOH A:535 , HOH A:594 , HOH A:605 , HOH A:612 , HOH A:663 , HOH A:746BINDING SITE FOR RESIDUE AMP A 401
2AC2SOFTWAREGLU A:97 , ASP A:118 , LEU A:120 , ASP A:121 , GLY A:122 , SER A:123 , GLU A:280 , MG A:403 , ZN A:404 , MG A:405 , MG A:406 , HOH A:561 , HOH A:628 , HOH A:648 , HOH A:740 , HOH A:757BINDING SITE FOR RESIDUE PO3 A 402
3AC3SOFTWAREGLU A:97 , ASP A:118 , ASP A:121 , GLU A:280 , PO3 A:402 , ZN A:404 , MG A:405 , HOH A:740BINDING SITE FOR RESIDUE MG A 403
4AC4SOFTWAREGLU A:97 , ASP A:118 , ASP A:121 , GLU A:280 , PO3 A:402 , MG A:403 , MG A:405BINDING SITE FOR RESIDUE ZN A 404
5AC5SOFTWAREGLU A:97 , ASP A:118 , LEU A:120 , PO3 A:402 , MG A:403 , ZN A:404 , MG A:406 , HOH A:524 , HOH A:561BINDING SITE FOR RESIDUE MG A 405
6AC6SOFTWAREGLU A:97 , PO3 A:402 , MG A:405 , HOH A:561 , HOH A:600 , HOH A:628 , HOH A:757BINDING SITE FOR RESIDUE MG A 406
7AC7SOFTWARESER A:131BINDING SITE FOR RESIDUE CL A 407

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HE2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HE2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HE2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HE2)

(-) Exons   (0, 0)

(no "Exon" information available for 4HE2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:308
                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4he2a_ A: automated matches                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh...eeeeee......ee.hhh.eeeeeeeeeeeehhhhh.....eeeeeeeee.......hhhhhh.hhhhh.eeeeeee...eeeeee....eeeeeee....eeeeeeeee.......eee.hhhhhhhhhhhhhhhhhhhhh........ee....hhhhhhhhhhhhh.eeee...............hhhhhhhhhhhh..eee....hhhhh..........eeeehhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4he2 A  11 LTLTRYVMEKGRQAKGTGELTRLLNSMLTAIKAISSAVRKAGLAKLDVLSNSLVINMLQSSYSTCVLVSEENKDAIITAKEKRGKYVVCFDPLDGSSNIDCLASIGTIFAIYRKTSEDEPSEKDALQCGRNIVAAGYALYGSATLVALSTGQGVDLFMLDPALGEFVLVEKDVKIKKKGKIYSLNEGYAKYFDAATTEYVQKKKFPEDGSAPYGARYVGSMVADVHRTLVYGGIFLYPANQKSPKGKLRLLYECNPVAYIIEQAGGLATTGTQPVLDVKPEAIHQRVPLILGSPEDVQEYLTCVQKNQ 335
                                    20        30        40        50   ||   77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327        
                                                                      54|                                                                                                                                                                                                                                                                       
                                                                       72
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HE2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HE2)

(-) Gene Ontology  (17, 17)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        F16P2_HUMAN | O00757: 3ifa 3ifc 4he0 4he1 5et5 5et6 5et7 5et8 5k54 5k55 5k56

(-) Related Entries Specified in the PDB File

4he0 CRYSTAL STRUCTURE OF HUMAN MUSCLE FRUCTOSE-1,6- BISPHOSPHATASE
4he1 CRYSTAL STRUCTURE OF HUMAN MUSCLE FRUCTOSE-1,6- BISPHOSPHATASE Q32R MUTANT COMPLEX WITH FRUCTOSE-6- PHOSPHATE AND PHOSPHATE