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(-) Description

Title :  CRYSTAL STRUCTURE OF THE DH-PH-PH DOMAIN OF FARP1
 
Authors :  X. He, X. Zhang
Date :  19 Sep 12  (Deposition) - 13 Mar 13  (Release) - 21 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  4.09
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Farp1, Dh-Ph, Gef, Guanine Nucleotide Exchange Factor, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. He, Y. C. Kuo, T. J. Rosche, X. Zhang
Structural Basis For Autoinhibition Of The Guanine Nucleotide Exchange Factor Farp2.
Structure V. 21 355 2013
PubMed-ID: 23375260  |  Reference-DOI: 10.1016/J.STR.2013.01.001

(-) Compounds

Molecule 1 - FERM, RHOGEF AND PLECKSTRIN DOMAIN-CONTAINING PROTEIN 1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: MODIFIED PET28A WITH A PRESCISSION PROTEASE SITE
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CDEP, FARP1, PLEKHC2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CHONDROCYTE-DERIVED EZRIN-LIKE PROTEIN, PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY C MEMBER 2, PH DOMAIN-CONTAINING FAMILY C MEMBER 2

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4H6Y)

(-) Sites  (0, 0)

(no "Site" information available for 4H6Y)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4H6Y)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Tyr A:808 -Gly A:809
2Tyr B:808 -Gly B:809

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4H6Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4H6Y)

(-) Exons   (0, 0)

(no "Exon" information available for 4H6Y)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:402
                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.ee..........eeeeeeeeee....eeeeeeeee..eeeee.....eeeeeeee....eeeee....eeeee....eeeee.....hhhhhhhhhhhhhhh...hhhhhhhhh.eeehhhhhhhhhh...eeeeee...eeeeeee...eeeee.........eeee....eee..eeeeee..eeeeeee..hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4h6y A  537 HMDKAYFIAKEVSTTERTYLKDLEVITSWFQSTVSKEDAMPEALKSLIFPNFEPLHKFHTNFLKEIEQRLALWEGDVMLKNIQGMKHLAAHLWKHSEALEALENGIKSSRRLENFCRDFELQKVCYLPLNTFLLRPLHRLMHYKQVLERLCKHHPRDCRAALAEITEMVAQLHGTMIKMENFQKLHELKKDLIGIDLVVPGREFIRLGSLSKLSGKGLQQRMFFLFNDVLLYTSRSNQFKVHGQLPLYGMTIEESEDPHCLTLRGQRQSIIVAASSRSEMEKWVEDIQMAIDLAETMVHVCWHRNTSVSMVDFSIAVENQLSGNLLRKFKWQKLWVVFTNFCLFFYKSHQDNHPLASLPLLGYSLTIYVFKLHFKSHVYYFRAESEYTFERWMEVIRSATSS 1030
                                   546       556       566       576       586       596       606   ||  629       639       649       659       669       679       689       699    || 715       725       735       745     ||756       766       776       786    || 800       810      |824       834       844       854    || 914       924       934       944|      958       968       978      |998      1008      1018      1028  
                                                                                                   610|                                                                             704|                                     751|                                   791|                  817|                                  859|                               944|                                 985|                                  
                                                                                                    624                                                                              711                                      753                                    796                   822                                   910                                949                                  996                                  


Chain B from PDB  Type:PROTEIN  Length:408
                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eee..eeeeee..eeeeeeeeee..eeeee......eeeeee......eee....eeeee....eeeee..hhhhhhhhhhhhhhhhh......hhhhhhh.....hhhhhhhh....eeeeeeee.....eeeee..eeeee.......eeeeee............eeeeee..eeeeeee...hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4h6y B  538 MDKAYFIAKEVSTTERTYLKDLEVITSWFQSTVSKEDAMPEALKSLIFPNFEPLHKFHTNFLKEIEQRLALWEIGDVMLKNIQGMKHLAAHLWKHSEALEALENGIKSSRRLENFCRDFELQKVCYLPLNTFLLRPLHRLMHYKQVLERLCKHHPPADFRDCRAALAEITEMVAQLHGTMIKMENFQKLHELKKDLIGIDLVVPGREFIRLGSLSKLSGKGLQQRMFFLFNDVLLYTSSNQFKVHGQLPLYGMTIEESEDPHCLTLRGQRQSIIVAASSRSEMEKWVEDIQMAIDLAEKSTMVHVCWHRNTSVSMVDFSIAVENQLSGNLLRKFWQKLWVVFTNFCLFFYKSHQDNHPLASLPLLGYSLTIPKDYVFKLHFKSHVYYFRAESEYTFERWMEVIRSATS 1029
                                   547       557       567       577       587       597       607  ||   629       639       649       659       669       679       689       699     ||711       721       731       741       751|      762       772       782       797       807       817|      831       841       851       861|      919       929       939   ||  954       964       974       984 ||   1001      1011      1021        
                                                                                                  610|                                                                               705|                                        751|                                  790|                  817|                                    861|                              943|                                  986|                                   
                                                                                                   623                                                                                708                                         753                                   796                   822                                     910                               949                                   994
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4H6Y)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4H6Y)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4H6Y)

(-) Gene Ontology  (24, 24)

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  Cis Peptide Bonds
    Tyr A:808 - Gly A:809   [ RasMol ]  
    Tyr B:808 - Gly B:809   [ RasMol ]  
 
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  FARP1_HUMAN | Q9Y4F1
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 Related Entries

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(-) Related Entries Specified in the PDB File

4gzu SAME DOMAIN OF HOMOLOG PROTEIN FARP2