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(-) Description

Title :  CRYSTAL STRUCTURE OF PYK2 WITH THE INDOLE 10C
 
Authors :  S. Han
Date :  10 Sep 12  (Deposition) - 28 Nov 12  (Release) - 12 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.99
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. K. Bhattacharya, G. E. Aspnes, S. W. Bagley, M. Boehm, A. D. Brosius, L. Buckbinder, J. S. Chang, J. Dibrino, H. Eng, K. S. Frederick, D. A. Griffith, M. C. Griffor, C. R. Guimaraes, A. Guzman-Perez, S. Han A. S. Kalgutkar, J. Klug-Mcleod, C. Garcia-Irizarry, J. Li, B. Lippa, D. A. Price, J. A. Southers, D. P. Walker, L. Wei, J. Xiao, M. P. Zawistoski, X. Zhao
Identification Of Novel Series Of Pyrazole And Indole-Urea Based Dfg-Out Pyk2 Inhibitors.
Bioorg. Med. Chem. Lett. V. 22 7523 2012
PubMed-ID: 23153798  |  Reference-DOI: 10.1016/J.BMCL.2012.10.039

(-) Compounds

Molecule 1 - PROTEIN-TYROSINE KINASE 2-BETA
    ChainsA
    EC Number2.7.10.2
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System CommonFALL ARMYWORM
    Expression System Taxid7108
    FragmentPROTEIN KINASE DOMAIN (UNP RESIDUES 416-692)
    GenePTK2B, FAK2, PYK2, RAFTK
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymPYK2, CALCIUM-DEPENDENT TYROSINE KINASE, CADTK, CALCIUM- REGULATED NON-RECEPTOR PROLINE-RICH TYROSINE KINASE, CELL ADHESION KINASE BETA, CAK-BETA, CAKB, FOCAL ADHESION KINASE 2, FADK 2, PROLINE-RICH TYROSINE KINASE 2, RELATED ADHESION FOCAL TYROSINE KINASE, RAFTK

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
10YJ1Ligand/Ion7-({[3-TERT-BUTYL-1-(4-METHYLPHENYL)-1H-PYRAZOL-5-YL]CARBAMOYL}AMINO)-N-(PROPAN-2-YL)-1H-INDOLE-2-CARBOXAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:432 , ALA A:455 , LYS A:457 , GLU A:474 , MET A:478 , LEU A:481 , VAL A:487 , MET A:502 , HIS A:547 , LEU A:565 , GLY A:566 , ASP A:567 , PHE A:568 , HOH A:846 , HOH A:854 , HOH A:858BINDING SITE FOR RESIDUE 0YJ A 701

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4H1M)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:496 -Pro A:497

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4H1M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4H1M)

(-) Exons   (0, 0)

(no "Exon" information available for 4H1M)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:256
                                                                                                                                                                                                                                                                                                
               SCOP domains d4h1ma_ A: automated matches                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhh.eeeeeeeee....eeeeeeee.....eeeeeeee.....hhhhhhhhhhhhhhhhhh.......eeeee.....eeeee.....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eeeee..eeee.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h1m A 420 IAREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEEPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDRLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQMEKDIA 690
                                   429       439       449       459       469       479       489       499       509       519       529       539       549       559       569 ||    594       604       614       624       634       644       654       664       674       684      
                                                                                                                                                                                 571|                                                                                                       
                                                                                                                                                                                  587                                                                                                       

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4H1M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4H1M)

(-) Gene Ontology  (144, 144)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FAK2_HUMAN | Q142892fo6 2lk4 3cc6 3et7 3fzo 3fzp 3fzr 3fzs 3fzt 3gm1 3gm2 3gm3 3h3c 3u3f 4eku 4h1j 4r32 4xef 4xek 4xev 5to8

(-) Related Entries Specified in the PDB File

4h1j