4H11 - JenaLib

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Biological Unit 3 (Jmol Viewer)

Title :   INTERACTION PARTNERS OF PSD-93 STUDIED BY X-RAY CRYSTALLOGRAPHY AND FLUORESCENT POLARIZATION SPECTROSCOPY

Authors :   M. Fiorentini, J. S. Kastrup, M. Gajhede

Date :   10 Sep 12 (Deposition) - 03 Apr 13 (Release) - 03 Apr 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.67

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A (1x),B (1x)

Keywords :   All Beta Pdz, Protein Interaction, Protein Binding, Neuropeptide (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Fiorentini, A. Bach, K. Stromgaard, J. S. Kastrup, M. Gajhede
Interaction Partners Of Psd-93 Studied By X-Ray Crystallography And Fluorescence Polarization Spectroscopy.
Acta Crystallogr. , Sect. D V. 69 587 2013
PubMed-ID: 23519667 | Reference-DOI: 10.1107/S0907444912051839

Molecule 1 - DISKS LARGE HOMOLOG 2
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PGEX-6P-1
	Expression System Strain	:	BL21 (DE3)PLYSS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	PDZ1: UNP RESIDUES 93-188
	Gene	:	DLG2, DLGH2
	Organism Common	:	RAT
	Organism Scientific	:	RATTUS NORVEGICUS
	Organism Taxid	:	10116
	Synonym	:	CHANNEL-ASSOCIATED PROTEIN OF SYNAPSE-110, CHAPSYN-110, POSTSYNAPTIC DENSITY PROTEIN PSD-93

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:	A (1x)	B (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 2)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 3 (2, 2)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	SO4	1	Ligand/Ion	SULFATE ION

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:120 , ILE A:121 , ARG A:185 , HIS B:120 , ILE B:121	BINDING SITE FOR RESIDUE SO4 B 201
2	AC2	SOFTWARE	LYS B:165 , GLY B:174 , SER B:175 , HOH B:334	BINDING SITE FOR RESIDUE ACT B 202

(no "SS Bond" information available for 4H11)

Asymmetric Unit

No.	Residues
1	Ser A:91	-	Pro A:92
2	Ser B:91	-	Pro B:92

(no "SAP(SNP)/Variant" information available for 4H11)

(no "PROSITE Motif" information available for 4H11)

(no "Exon" information available for 4H11)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:102
                                                                                                                                      
               SCOP domains d4h11a_ A: automated matches                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeee.......eeee......hhhhh..eeeeee...hhhhhhh......eeeee..ee....hhhhhhhhhhhh..eeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 4h11 A  91 SPEFEFEEITLERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHSKAVEALKEAGSIVRLYVRRRRPILGTSI 192
                                   100       110       120       130       140       150       160       170       180       190

Chain B from PDB  Type:PROTEIN  Length:102
                                                                                                                                      
               SCOP domains d4h11b_ B: automated matches                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeee.......eeeee............eeeeee...hhhhhhh......eeeee..ee....hhhhhhhhhhh...eeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 4h11 B  91 SPEFEFEEITLERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHSKAVEALKEAGSIVRLYVRRRRPILGTSI 192
                                   100       110       120       130       140       150       160       170       180       190

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

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Class: All beta proteins (24004)

Fold: PDZ domain-like (299)

Superfamily: PDZ domain-like (299)

Family: PDZ domain (180)

Protein domain: automated matches (53)

Norway rat (Rattus norvegicus) [TaxId: 10116] (9)

1a	d4h11a_	A:
1b	d4h11b_	B:

(no "CATH Domain" information available for 4H11)

(no "Pfam Domain" information available for 4H11)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Ligands, Modified Residues, Ions
		ACT	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Ser A:91 - Pro A:92	[ RasMol ]
		Ser B:91 - Pro B:92	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]

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	4h11
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		Orientation in Membranes	:	OPM
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Description

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Ligands, Modified Residues, Ions (2, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

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