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(-) Description

Title :  CRYSTAL STRUCTURE OF A MEAB- AND MMAA-LIKE GTPASE FROM MYCOBACTERIUM TUBERCULOSIS BOUND TO 2'-DEOXYGUANOSINE DIPHOSPHATE
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  28 Aug 12  (Deposition) - 05 Sep 12  (Release) - 03 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Mycobacterium, Gtpase, Atpase, Substrate-Specificity, Hydrolase, G-Protein, Ras-Like Gtpase, Argk Superfamily, Chain Swapped Homodimer (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. E. Edwards, L. Baugh, J. Bullen, R. O. Baydo, P. Witte, K. Thompkins, I. Q. Phan, J. Abendroth, M. C. Clifton, B. Sankaran, W. C. Van Voorhis P. J. Myler, B. L. Staker, C. Grundner, D. D. Lorimer
Crystal Structures Of Mycobacterial Meab And Mmaa-Like Gtpases.
J. Struct. Funct. Genom. V. 16 91 2015
PubMed-ID: 25832174  |  Reference-DOI: 10.1007/S10969-015-9197-2

(-) Compounds

Molecule 1 - PROBABLE GTPASE RV1496/MT1543
    ChainsA
    EC Number3.6.-.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPAVA0421
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneMT1543, MTCY277.18, RV1496
    Organism ScientificMYCOBACTERIUM TUBERCULOSIS
    Organism Taxid1773
    StrainH37RV

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric Unit (3, 4)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2DGI1Ligand/Ion2'-DEOXYGUANOSINE-5'-DIPHOSPHATE
3PGE2Ligand/IonTRIETHYLENE GLYCOL
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2DGI2Ligand/Ion2'-DEOXYGUANOSINE-5'-DIPHOSPHATE
3PGE4Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:68 , VAL A:69 , GLY A:70 , LYS A:71 , SER A:72 , THR A:73 , ASN A:204 , LYS A:205 , ASP A:207 , SER A:243 , ALA A:244 , VAL A:245 , HOH A:568 , HOH A:617 , HOH A:618 , HOH A:629BINDING SITE FOR RESIDUE DGI A 401
2AC2SOFTWAREGLU A:232 , ALA A:233 , LEU A:234 , TRP A:235 , ARG A:236 , HOH A:615 , HOH A:620BINDING SITE FOR RESIDUE PGE A 402
3AC3SOFTWARELYS A:192 , GLU A:196 , LEU A:197 , ALA A:198 , ASP A:199 , TYR A:229 , GLU A:232 , TRP A:235 , ARG A:273 , HOH A:541 , HOH A:542BINDING SITE FOR RESIDUE PGE A 403
4AC4SOFTWAREGLY A:268 , PHE A:270 , ASP A:271 , HOH A:616BINDING SITE FOR RESIDUE CL A 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GT1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GT1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GT1)

(-) Exons   (0, 0)

(no "Exon" information available for 4GT1)

(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:302
                                                                                                                                                                                                                                                                                                                                              
               SCOP domains d4gt1a_ A: automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh..hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhh...eeeeee..hhhhh...eeee.hhhhhhhhhhhhhhhhhh...eeeeee....hhhhhhhh...eeeeeee.............hhhhh.eeeee..hhhhhhhhhhhhhhhhhhhhhhh.........eee.hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gt1 A  10 TVDGLATAVRGGDRAALPRAITLVESTRPDHREQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDMARLAVHPNAYIRTLGGVTRATRETVVLLEAAGFDVILIETVGVGQSEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVLTGAGEFDARRRDQQVDWTWQLVRDAVLDRVWSNPTVRKVRSELERRVRAGELTPALAAQQILEIANLTD 333
                                    19        29        39        49        59        69        79        89     ||115       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331  
                                                                                                                95|         124|                                                                                                                                                                                                          
                                                                                                                112          131                                                                                                                                                                                                          

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GT1)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (5, 10)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Y1496_MYCTO | P9WPZ03md0 3p32
        Y1496_MYCTU | P9WPZ13md0 3p32

(-) Related Entries Specified in the PDB File

3md0 RV1496 BOUND TO GDP
3nxs RV1496 ORTHOLOG FROM M. SMEGMATIS BOUND TO GDP
3p32 RV1496 CO-CRYSTALLIZED WITH GTP RELATED ID: MYTUD.00200.A RELATED DB: TARGETTRACK
3tk1 RV1496 ORTHOLOG FROM M. THERMORESISTIBLE BOUND TO GDP