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(-) Description

Title :  CRYSTAL STRUCTURE OF ENTEROVIRUS 71 STRAIN 1095 PROCAPSID
 
Authors :  J. D. Yoder, S. Hafenstein
Date :  16 Aug 12  (Deposition) - 15 May 13  (Release) - 14 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.90
Chains :  Asym. Unit :  0,1,3
Biol. Unit 1:  0,1,3  (60x)
Keywords :  Capsid Protein, Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. O. Cifuente, H. Lee, J. D. Yoder, K. L. Shingler, M. S. Carnegie, J. L. Yoder, R. E. Ashley, A. M. Makhov, J. F. Conway, S. Hafenstein
Structures Of The Procapsid And Mature Virion Of Enteroviru 71 Strain 1095.
J. Virol. V. 87 7637 2013
PubMed-ID: 23637404  |  Reference-DOI: 10.1128/JVI.03519-12

(-) Compounds

Molecule 1 - CAPSID PROTEIN VP0
    Chains: 0
    Fragment: UNP RESIDUES 1-323
    Organism Scientific: HUMAN ENTEROVIRUS 71
    Organism Taxid: 39054
    Strain: 1095
    Synonym: CAPSID PROTEIN VP2, CAPSID PROTEIN VP4
 
Molecule 2 - CAPSID PROTEIN VP1
    Chains: 1
    Fragment: UNP RESIDUES 566-862
    Organism Scientific: HUMAN ENTEROVIRUS 71
    Organism Taxid: 39054
    Strain: 1095
 
Molecule 3 - CAPSID PROTEIN VP3
    Chains: 3
    Fragment: UNP RESIDUES 324-565
    Organism Scientific: HUMAN ENTEROVIRUS 71
    Organism Taxid: 39054
    Strain: 1095

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : 013
Biological Unit 1 (60x): 013

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4GMP)

(-) Sites  (0, 0)

(no "Site" information available for 4GMP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GMP)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Phe 0:151 -Pro 0:152

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GMP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GMP)

(-) Exons   (0, 0)

(no "Exon" information available for 4GMP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain 0 from PDB  Type:PROTEIN  Length:237
                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................eee.hhh..........................ee...eee......eeeeehhhhhh..hhhhhhhheeee.....eeeee.....eeeeeeeeeee........................hhhhhee..hhhhh....hhhhhhhh.eeeee......eeee.........ee......eeeeeeeeeeeee.......eeeeeee......eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gmp 0  82 VAQLTIGNSTITTQEAANIIVGYGEWPSYCSDSDATAVDKPTRPDVSVNRFYTLDTKLWEKSSKGWYWKFPDVLTETGVFGQNAQFHYLYRSGFCIHVQCNASKFHQGALLVAILPEYVIGTVAGGTGTEDSHPPYKQTQPGADGFELQHPYVLDAGIPISQLTVCPHQWINLRTNNCATIIVPYINALPFDSALNHCNFGLLVVPISPLDYDQGATPVIPITITLAPMCSEFAGLR 318
                                    91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       


Chain 1 from PDB  Type:PROTEIN  Length:218
                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh..eeeeeeee..........eeeee.hhhhhhhhhhhhh.eeeeeeeeeeeeeee.........eeeeee......................eeeee.....eeeee................................eeeeee.........eeeeeeeeeeeeeeeee.................................. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gmp 1  73 HSTAETTLDSFFSRAGLVGEIDLPLEGTTNPNGYANWDIDITGYAQMRRKVELFTYMRFDAEFTFVACTPTGGVVPQLLQYMFVPPGAPKPDSRESLAWQTATNPSVFVKLSDPPAQVSVPFMSPASAYQWFYDGYPTKDLEYGACPNNMMGTFSVRTVGTSKSKYPLVVRIYMRMKHVRAWIPRPMRNQNYLFKANPNYAGNSIKPTGASRTAITTL 297
                                    82        92       102       112       122       132       142       152       162       172       182       192       202       219       229       239       249       259       269       279       289        
                                                                                                                                                                   210|                                                                               
                                                                                                                                                                    218                                                                               


Chain 3 from PDB  Type:PROTEIN  Length:240
                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......................................ee....hhhhh.ee........hhhhhhhh.eeeee.......eeeeeee.....hhhhhhhhhhhhh.eeeeeeeeeeeeee........eeeeeee........hhhhhhh..eeeee.....eeeeeeeeeee.................eeeeeee............eeeeeeee......eeeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4gmp 3   1 GFPTELKPGTNQFLTTDDGVSAPILPNFYPTPCIHIPGEVRNLLELCQVETILEVNNVPTNATSLMERLRFPVSAQAGKGELCAVFRADPGRSGPWQSTLLGQLCGYYTQWSGSLEVTFMFTGSFMATGKMLIAYTPPGGPLPKDRATAMLGTHVIWDFGLQSSVTLVIPWISNTHYRAHARDGVFDYYTTGLVSIWYQTNYVVPIGAPNTAYIIALAAAQKNFTMKLCKDASDILQTGT 240
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GMP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GMP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GMP)

(-) Gene Ontology  (36, 39)

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  Sites
(no "Sites" information available for 4gmp)
 
  Cis Peptide Bonds
    Phe 0:151 - Pro 0:152   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        E5RPG0_9ENTO | E5RPG0: 3j91

(-) Related Entries Specified in the PDB File

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