Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF THE MIRROR IMAGE FORM OF VEGF-A
 
Authors :  K. Mandal, M. Uppalapati, D. Ault-Riche, J. Kenney, J. Lowitz, S. Sidhu S. B. H. Kent
Date :  14 Aug 12  (Deposition) - 05 Sep 12  (Release) - 27 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  A (1x),B (1x),C (1x),D (1x),E (1x),F (1x)
Keywords :  D-Protein, Covalent Dimer, Cysteine Knot Protein, Growth Factor, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Mandal, M. Uppalapati, D. Ault-Riche, J. Kenney, J. Lowitz, S. S. Sidhu, S. B. Kent
Chemical Synthesis And X-Ray Structure Of A Heterochiral {D-Protein Antagonist Plus Vascular Endothelial Growth Factor} Protein Complex By Racemic Crystallography.
Proc. Natl. Acad. Sci. Usa V. 109 14779 2012
PubMed-ID: 22927390  |  Reference-DOI: 10.1073/PNAS.1210483109

(-) Compounds

Molecule 1 - D- VASCULAR ENDOTHELIAL GROWTH FACTOR-A
    Chains: A, D, B, C, E, F
    Engineered: YES
    Other Details: D-ENANTIOMER
    Other Details - Source: THE PEPTIDE IS NATURALLY FOUND IN HOMO SAPIENS
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A  D  
Biological Unit 2 (1x):  BC   
Biological Unit 3 (1x):     EF
Biological Unit 4 (1x): A (1x)B (1x)C (1x)D (1x)E (1x)F (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (20, 566)

Asymmetric Unit (20, 566)
No.NameCountTypeFull Name
1ACT10Ligand/IonACETATE ION
2DAR24Mod. Amino AcidD-ARGININE
3DAS26Mod. Amino AcidD-ASPARTIC ACID
4DCY48Mod. Amino AcidD-CYSTEINE
5DGL65Mod. Amino AcidD-GLUTAMIC ACID
6DGN36Mod. Amino AcidD-GLUTAMINE
7DHI25Mod. Amino AcidD-HISTIDINE
8DIL48Mod. Amino AcidD-ISOLEUCINE
9DLE24Mod. Amino AcidD-LEUCINE
10DLY33Mod. Amino AcidD-LYSINE
11DPN24Mod. Amino AcidD-PHENYLALANINE
12DPR42Mod. Amino AcidD-PROLINE
13DSG18Mod. Amino AcidD-ASPARAGINE
14DSN24Mod. Amino AcidD-SERINE
15DTH18Mod. Amino AcidD-THREONINE
16DTY24Mod. Amino AcidD-TYROSINE
17DVA36Mod. Amino AcidD-VALINE
18GOL4Ligand/IonGLYCEROL
19MED30Mod. Amino AcidD-METHIONINE
20TFA7Ligand/IonTRIFLUOROACETIC ACID
Biological Unit 1 (20, 188)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2DAR8Mod. Amino AcidD-ARGININE
3DAS8Mod. Amino AcidD-ASPARTIC ACID
4DCY16Mod. Amino AcidD-CYSTEINE
5DGL21Mod. Amino AcidD-GLUTAMIC ACID
6DGN12Mod. Amino AcidD-GLUTAMINE
7DHI8Mod. Amino AcidD-HISTIDINE
8DIL16Mod. Amino AcidD-ISOLEUCINE
9DLE8Mod. Amino AcidD-LEUCINE
10DLY11Mod. Amino AcidD-LYSINE
11DPN8Mod. Amino AcidD-PHENYLALANINE
12DPR14Mod. Amino AcidD-PROLINE
13DSG6Mod. Amino AcidD-ASPARAGINE
14DSN8Mod. Amino AcidD-SERINE
15DTH6Mod. Amino AcidD-THREONINE
16DTY8Mod. Amino AcidD-TYROSINE
17DVA12Mod. Amino AcidD-VALINE
18GOL1Ligand/IonGLYCEROL
19MED10Mod. Amino AcidD-METHIONINE
20TFA4Ligand/IonTRIFLUOROACETIC ACID
Biological Unit 2 (20, 190)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2DAR8Mod. Amino AcidD-ARGININE
3DAS9Mod. Amino AcidD-ASPARTIC ACID
4DCY16Mod. Amino AcidD-CYSTEINE
5DGL22Mod. Amino AcidD-GLUTAMIC ACID
6DGN12Mod. Amino AcidD-GLUTAMINE
7DHI9Mod. Amino AcidD-HISTIDINE
8DIL16Mod. Amino AcidD-ISOLEUCINE
9DLE8Mod. Amino AcidD-LEUCINE
10DLY11Mod. Amino AcidD-LYSINE
11DPN8Mod. Amino AcidD-PHENYLALANINE
12DPR14Mod. Amino AcidD-PROLINE
13DSG6Mod. Amino AcidD-ASPARAGINE
14DSN8Mod. Amino AcidD-SERINE
15DTH6Mod. Amino AcidD-THREONINE
16DTY8Mod. Amino AcidD-TYROSINE
17DVA12Mod. Amino AcidD-VALINE
18GOL2Ligand/IonGLYCEROL
19MED10Mod. Amino AcidD-METHIONINE
20TFA1Ligand/IonTRIFLUOROACETIC ACID
Biological Unit 3 (20, 188)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2DAR8Mod. Amino AcidD-ARGININE
3DAS9Mod. Amino AcidD-ASPARTIC ACID
4DCY16Mod. Amino AcidD-CYSTEINE
5DGL22Mod. Amino AcidD-GLUTAMIC ACID
6DGN12Mod. Amino AcidD-GLUTAMINE
7DHI8Mod. Amino AcidD-HISTIDINE
8DIL16Mod. Amino AcidD-ISOLEUCINE
9DLE8Mod. Amino AcidD-LEUCINE
10DLY11Mod. Amino AcidD-LYSINE
11DPN8Mod. Amino AcidD-PHENYLALANINE
12DPR14Mod. Amino AcidD-PROLINE
13DSG6Mod. Amino AcidD-ASPARAGINE
14DSN8Mod. Amino AcidD-SERINE
15DTH6Mod. Amino AcidD-THREONINE
16DTY8Mod. Amino AcidD-TYROSINE
17DVA12Mod. Amino AcidD-VALINE
18GOL1Ligand/IonGLYCEROL
19MED10Mod. Amino AcidD-METHIONINE
20TFA2Ligand/IonTRIFLUOROACETIC ACID
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2DAR-1Mod. Amino AcidD-ARGININE
3DAS-1Mod. Amino AcidD-ASPARTIC ACID
4DCY-1Mod. Amino AcidD-CYSTEINE
5DGL-1Mod. Amino AcidD-GLUTAMIC ACID
6DGN-1Mod. Amino AcidD-GLUTAMINE
7DHI-1Mod. Amino AcidD-HISTIDINE
8DIL-1Mod. Amino AcidD-ISOLEUCINE
9DLE-1Mod. Amino AcidD-LEUCINE
10DLY-1Mod. Amino AcidD-LYSINE
11DPN-1Mod. Amino AcidD-PHENYLALANINE
12DPR-1Mod. Amino AcidD-PROLINE
13DSG-1Mod. Amino AcidD-ASPARAGINE
14DSN-1Mod. Amino AcidD-SERINE
15DTH-1Mod. Amino AcidD-THREONINE
16DTY-1Mod. Amino AcidD-TYROSINE
17DVA-1Mod. Amino AcidD-VALINE
18GOL-1Ligand/IonGLYCEROL
19MED-1Mod. Amino AcidD-METHIONINE
20TFA-1Ligand/IonTRIFLUOROACETIC ACID

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREDSG A:68 , DPR B:63 , DGL B:66BINDING SITE FOR RESIDUE TFA A 202
02AC2SOFTWAREDGN A:82 , DHI A:83 , DAS F:12BINDING SITE FOR RESIDUE ACT A 203
03AC3SOFTWAREGLY A:52 , DLE D:25 , DCY D:44 , HOH D:340BINDING SITE FOR RESIDUE ACT D 201
04AC4SOFTWAREDPR D:46 , DGN D:91BINDING SITE FOR RESIDUE GOL D 202
05AC5SOFTWAREDPR A:46 , DAR D:16BINDING SITE FOR RESIDUE TFA D 203
06AC6SOFTWAREDLE A:25 , GLY D:51 , GLY D:52 , HOH D:324BINDING SITE FOR RESIDUE TFA D 204
07AC7SOFTWAREDGL D:66 , DGN F:72 , GLY F:85BINDING SITE FOR RESIDUE TFA D 205
08AC8SOFTWAREDCY B:44BINDING SITE FOR RESIDUE ACT B 201
09AC9SOFTWAREDTY B:14 , DCY B:53 , DCY B:54 , DSG B:55 , HOH B:324 , DLY C:41 , DPR C:42 , DSN C:43 , HOH C:308BINDING SITE FOR RESIDUE ACT B 202
10BC1SOFTWAREDPR A:63 , DGL A:66 , DSG B:68BINDING SITE FOR RESIDUE ACT B 203
11BC2SOFTWAREDGL B:23 , DPR B:46 , MED B:48 , DIL B:69 , MED B:71 , HOH B:380 , DAR C:16BINDING SITE FOR RESIDUE GOL C 201
12BC3SOFTWAREHOH C:336BINDING SITE FOR RESIDUE ACT C 202
13BC4SOFTWAREDTY B:38 , DAR B:75 , DHI B:83 , DAS C:12 , DAR C:16BINDING SITE FOR RESIDUE GOL C 203
14BC5SOFTWAREDGL B:35 , DAR B:75 , MED B:87 , MED C:11 , HOH C:317BINDING SITE FOR RESIDUE TFA C 204
15BC6SOFTWAREDPR E:46 , DGN E:91BINDING SITE FOR RESIDUE ACT E 201
16BC7SOFTWAREDLE E:25 , HOH E:309 , HOH E:353 , GLY F:52BINDING SITE FOR RESIDUE ACT E 202
17BC8SOFTWAREGLY E:52 , DLE F:25 , DAS F:27BINDING SITE FOR RESIDUE TFA F 201
18BC9SOFTWAREDPR F:46 , DLE F:47 , DIL F:69 , MED F:71 , DGN F:91BINDING SITE FOR RESIDUE GOL F 202
19CC1SOFTWAREDSG D:68 , DGN F:82BINDING SITE FOR RESIDUE TFA F 203
20CC2SOFTWAREDSN E:43 , DCY F:53 , DCY F:54 , DSG F:55 , DAS F:56 , HOH F:362BINDING SITE FOR RESIDUE ACT F 204

(-) SS Bonds  (24, 24)

Asymmetric Unit
No.Residues
1A:19 -A:61
2A:44 -D:53
3A:50 -A:95
4A:53 -D:44
5A:54 -A:97
6B:19 -B:61
7B:44 -C:53
8B:50 -B:95
9B:53 -C:44
10B:54 -B:97
11C:19 -C:61
12C:50 -C:95
13C:54 -C:97
14D:19 -D:61
15D:50 -D:95
16D:54 -D:97
17E:19 -E:61
18E:44 -F:53
19E:50 -E:95
20E:53 -F:44
21E:54 -E:97
22F:19 -F:61
23F:50 -F:95
24F:54 -F:97

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Dly A:41 -Dpr A:42
2Dly D:41 -Dpr D:42
3Dly B:41 -Dpr B:42
4Dly C:41 -Dpr C:42
5Dly E:41 -Dpr E:42
6Dly F:41 -Dpr F:42

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GLU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GLU)

(-) Exons   (0, 0)

(no "Exon" information available for 4GLU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh.eeeeeeeehhhhhhhhh..eee..eeeeeeee.......eeeeeeeeeeeeeeeeeee...eeeeeeeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 4glu A   7 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGxxxxxGxxxxxxxxxxxxxxxxxxxxxxGxxxGxxxxxxxxxxxxxxxx 101
                            ||||||||16||||||||26||||||||36||||||||46||||  ||56| ||||||66||||||||76|||| |||86||||||||96|||||
                            |||||||15-DGN|||24-DTH|||33-DPR|||42-DPR||||  54-DCY||||64-DTH|||73-DIL||| 83-DHI||||93-DSG||||
                            7-DVA|||16-DAR|||25-DLE|||34-DAS|||43-DSN|||  |55-DSG||||65-DGL|||74-MED|| |84-DIL||||94-DLY|||
                             8-DVA|| 17-DSN|| 26-DVA|| 35-DGL|| 44-DCY||  | 56-DAS||| 66-DGL|| 75-DAR| |  86-DGL|| 95-DCY||
                              9-DLY|  18-DTY|  27-DAS|  36-DIL|  45-DVA|  |  57-DGL||  67-DSN|  76-DIL |   87-MED|  96-DGL|
                              10-DPN   19-DCY   28-DIL   37-DGL   46-DPR  |    59-DLE   68-DSG   77-DLY|    88-DSN   97-DCY
                               11-MED   20-DHI   29-DPN   38-DTY   47-DLE |     60-DGL   69-DIL   78-DPR     89-DPN   98-DAR
                                12-DAS   21-DPR   30-DGN   39-DIL   48-MED|      61-DCY   70-DTH   79-DHI     90-DLE   99-DPR
                                 13-DVA   22-DIL   31-DGL   40-DPN   49-DAR       62-DVA   71-MED   80-DGN     91-DGN  100-DLY
                                  14-DTY   23-DGL   32-DTY   41-DLY   50-DCY       63-DPR   72-DGN    82-DGN    92-DHI  101-DLY


Chain B from PDB  Type:PROTEIN  Length:97
                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh.eeeeeeeehhhhh......eee..eeeeeeee.......eeeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                 4glu B   6 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGxxxxxGxxxxxxxxxxxxxxxxxxxxxxGxxxGxxxxxxxxxxxxxxxxx 102
                            ||||||||15||||||||25||||||||35||||||||45|||||  |55|| |||||65||||||||75||||| ||85||||||||95|||||||
                            |||||||14-DTY|||23-DGL|||32-DTY|||41-DLY|||50-DCY||| ||62-DVA|||71-MED|||80-DGN ||||91-DGN||100-DLY
                            6-DGL|||15-DGN|||24-DTH|||33-DPR|||42-DPR|||  53-DCY |||63-DPR|||72-DGN||| 82-DGN||||92-DHI||101-DLY
                             7-DVA|| 16-DAR|| 25-DLE|| 34-DAS|| 43-DSN||   54-DCY||| 64-DTH|| 73-DIL||  83-DHI||| 93-DSG||102-DAS
                              8-DVA|  17-DSN|  26-DVA|  35-DGL|  44-DCY|    55-DSG||  65-DGL|  74-MED|   84-DIL||  94-DLY|   
                               9-DLY   18-DTY   27-DAS   36-DIL   45-DVA     56-DAS|   66-DGL   75-DAR     86-DGL   95-DCY   
                               10-DPN   19-DCY   28-DIL   37-DGL   46-DPR     57-DGL    67-DSN   76-DIL     87-MED   96-DGL  
                                11-MED   20-DHI   29-DPN   38-DTY   47-DLE      59-DLE   68-DSG   77-DLY     88-DSN   97-DCY 
                                 12-DAS   21-DPR   30-DGN   39-DIL   48-MED      60-DGL   69-DIL   78-DPR     89-DPN   98-DAR
                                  13-DVA   22-DIL   31-DGL   40-DPN   49-DAR      61-DCY   70-DTH   79-DHI     90-DLE   99-DPR


Chain C from PDB  Type:PROTEIN  Length:96
                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhh.eeeeeeeehhhhh......eee..eeeeeeee.......eeeeeeeeeeeeeeeeeee...eeeeeeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 4glu C   5 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGxxxxxGxxxxxxxxxxxxxxxxxxxxxxGxxxGxxxxxxxxxxxxxxx 100
                            ||||||||14||||||||24||||||||34||||||||44||||||  54||| ||||64||||||||74|||||| |84 |||||||94||||||
                            |||||||13-DVA|||22-DIL|||31-DGL|||40-DPN|||49-DAR|||| |61-DCY|||70-DTH|||79-DHI| |||90-DLE|||99-DPR
                            5-DHI|||14-DTY|||23-DGL|||32-DTY|||41-DLY|||50-DCY||| ||62-DVA|||71-MED|||80-DGN ||||91-DGN||100-DLY
                             6-DGL|| 15-DGN|| 24-DTH|| 33-DPR|| 42-DPR||   53-DCY || 63-DPR|| 72-DGN||  82-DGN||| 92-DHI||  
                              7-DVA|  16-DAR|  25-DLE|  34-DAS|  43-DSN|    54-DCY||  64-DTH|  73-DIL|   83-DHI||  93-DSG|  
                               8-DVA   17-DSN   26-DVA   35-DGL   44-DCY     55-DSG|   65-DGL   74-MED    84-DIL|   94-DLY  
                                9-DLY   18-DTY   27-DAS   36-DIL   45-DVA     56-DAS    66-DGL   75-DAR     86-DGL   95-DCY 
                                10-DPN   19-DCY   28-DIL   37-DGL   46-DPR     57-DGL    67-DSN   76-DIL     87-MED   96-DGL
                                 11-MED   20-DHI   29-DPN   38-DTY   47-DLE      59-DLE   68-DSG   77-DLY     88-DSN   97-DCY
                                  12-DAS   21-DPR   30-DGN   39-DIL   48-MED      60-DGL   69-DIL   78-DPR     89-DPN   98-DAR


Chain D from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh.eeeeeeeehhhhh......eee..eeeeeeee.......eeeeeeeeeeeeeeeeeee...eeeeeeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 4glu D   6 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGxxxxxGxxxxxxxxxxxxxxxxxxxxxxGxxxGxxxxxxxxxxxxxxx 100
                            ||||||||15||||||||25||||||||35||||||||45|||||  |55|| |||||65||||||||75||||| ||85||||||||95|||||
                            |||||||14-DTY|||23-DGL|||32-DTY|||41-DLY|||50-DCY||| ||62-DVA|||71-MED|||80-DGN ||||91-DGN||100-DLY
                            6-DGL|||15-DGN|||24-DTH|||33-DPR|||42-DPR|||  53-DCY |||63-DPR|||72-DGN||| 82-DGN||||92-DHI||| 
                             7-DVA|| 16-DAR|| 25-DLE|| 34-DAS|| 43-DSN||   54-DCY||| 64-DTH|| 73-DIL||  83-DHI||| 93-DSG|| 
                              8-DVA|  17-DSN|  26-DVA|  35-DGL|  44-DCY|    55-DSG||  65-DGL|  74-MED|   84-DIL||  94-DLY| 
                               9-DLY   18-DTY   27-DAS   36-DIL   45-DVA     56-DAS|   66-DGL   75-DAR     86-DGL   95-DCY 
                               10-DPN   19-DCY   28-DIL   37-DGL   46-DPR     57-DGL    67-DSN   76-DIL     87-MED   96-DGL
                                11-MED   20-DHI   29-DPN   38-DTY   47-DLE      59-DLE   68-DSG   77-DLY     88-DSN   97-DCY
                                 12-DAS   21-DPR   30-DGN   39-DIL   48-MED      60-DGL   69-DIL   78-DPR     89-DPN   98-DAR
                                  13-DVA   22-DIL   31-DGL   40-DPN   49-DAR      61-DCY   70-DTH   79-DHI     90-DLE   99-DPR


Chain E from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh.eeeeeeeehhhhh......eee..eeeeeeee.......eeeeeeeeeeeeeeeeeee...eeeeeeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 4glu E   6 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGxxxxxGxxxxxxxxxxxxxxxxxxxxxxGxxxGxxxxxxxxxxxxxxx 100
                            ||||||||15||||||||25||||||||35||||||||45|||||  |55|| |||||65||||||||75||||| ||85||||||||95|||||
                            |||||||14-DTY|||23-DGL|||32-DTY|||41-DLY|||50-DCY||| ||62-DVA|||71-MED|||80-DGN ||||91-DGN||100-DLY
                            6-DGL|||15-DGN|||24-DTH|||33-DPR|||42-DPR|||  53-DCY |||63-DPR|||72-DGN||| 82-DGN||||92-DHI||| 
                             7-DVA|| 16-DAR|| 25-DLE|| 34-DAS|| 43-DSN||   54-DCY||| 64-DTH|| 73-DIL||  83-DHI||| 93-DSG|| 
                              8-DVA|  17-DSN|  26-DVA|  35-DGL|  44-DCY|    55-DSG||  65-DGL|  74-MED|   84-DIL||  94-DLY| 
                               9-DLY   18-DTY   27-DAS   36-DIL   45-DVA     56-DAS|   66-DGL   75-DAR     86-DGL   95-DCY 
                               10-DPN   19-DCY   28-DIL   37-DGL   46-DPR     57-DGL    67-DSN   76-DIL     87-MED   96-DGL
                                11-MED   20-DHI   29-DPN   38-DTY   47-DLE      59-DLE   68-DSG   77-DLY     88-DSN   97-DCY
                                 12-DAS   21-DPR   30-DGN   39-DIL   48-MED      60-DGL   69-DIL   78-DPR     89-DPN   98-DAR
                                  13-DVA   22-DIL   31-DGL   40-DPN   49-DAR      61-DCY   70-DTH   79-DHI     90-DLE   99-DPR


Chain F from PDB  Type:PROTEIN  Length:97
                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhh.eeeeeeeehhhhh......eee..eeeeeeee.......eeeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                 4glu F   6 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGxxxxxGxxxxxxxxxxxxxxxxxxxxxxGxxxGxxxxxxxxxxxxxxxxx 102
                            ||||||||15||||||||25||||||||35||||||||45|||||  |55|| |||||65||||||||75||||| ||85||||||||95|||||||
                            |||||||14-DTY|||23-DGL|||32-DTY|||41-DLY|||50-DCY||| ||62-DVA|||71-MED|||80-DGN ||||91-DGN||100-DLY
                            6-DGL|||15-DGN|||24-DTH|||33-DPR|||42-DPR|||  53-DCY |||63-DPR|||72-DGN||| 82-DGN||||92-DHI||101-DLY
                             7-DVA|| 16-DAR|| 25-DLE|| 34-DAS|| 43-DSN||   54-DCY||| 64-DTH|| 73-DIL||  83-DHI||| 93-DSG||102-DAS
                              8-DVA|  17-DSN|  26-DVA|  35-DGL|  44-DCY|    55-DSG||  65-DGL|  74-MED|   84-DIL||  94-DLY|   
                               9-DLY   18-DTY   27-DAS   36-DIL   45-DVA     56-DAS|   66-DGL   75-DAR     86-DGL   95-DCY   
                               10-DPN   19-DCY   28-DIL   37-DGL   46-DPR     57-DGL    67-DSN   76-DIL     87-MED   96-DGL  
                                11-MED   20-DHI   29-DPN   38-DTY   47-DLE      59-DLE   68-DSG   77-DLY     88-DSN   97-DCY 
                                 12-DAS   21-DPR   30-DGN   39-DIL   48-MED      60-DGL   69-DIL   78-DPR     89-DPN   98-DAR
                                  13-DVA   22-DIL   31-DGL   40-DPN   49-DAR      61-DCY   70-DTH   79-DHI     90-DLE   99-DPR
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GLU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GLU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GLU)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4GLU)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    ACT  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DAR  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DAS  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DCY  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DGL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DGN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DHI  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DIL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DLE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DLY  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DPN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DPR  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DSG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DSN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DTH  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DTY  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DVA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MED  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    TFA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Dly A:41 - Dpr A:42   [ RasMol ]  
    Dly B:41 - Dpr B:42   [ RasMol ]  
    Dly C:41 - Dpr C:42   [ RasMol ]  
    Dly D:41 - Dpr D:42   [ RasMol ]  
    Dly E:41 - Dpr E:42   [ RasMol ]  
    Dly F:41 - Dpr F:42   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4glu
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  (no 'UniProt ID/Accession number' available) |
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  (no 'UniProt ID/Accession number' available) |
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 4GLU)

(-) Related Entries Specified in the PDB File

3qtk 4gln 4gls