Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
(-)Biological Unit 5
(-)Biological Unit 6
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)
Image Biological Unit 5
Biological Unit 5  (Jmol Viewer)
Image Biological Unit 6
Biological Unit 6  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF A PUTATIVE TRANSCRIPTION FACTOR (PA1374)FROM PSEUDOMONAS AERUGINOSA
 
Authors :  J. Choe, H. Kim
Date :  31 Jul 12  (Deposition) - 24 Jul 13  (Release) - 31 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Biol. Unit 5:  I,J  (1x)
Biol. Unit 6:  K,L  (1x)
Keywords :  Helex-Turn-Helex, Transcription Factor, Dna Binding, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Kim, J. Choe
The X-Ray Crystal Structure Of Pa1374 From Pseudomonas Aeruginosa, A Putative Oxidative-Stress Sensing Transcriptional Regulator.
Biochem. Biophys. Res. Commun. V. 431 376 2013
PubMed-ID: 23337505  |  Reference-DOI: 10.1016/J.BBRC.2013.01.044

(-) Compounds

Molecule 1 - PUTATIVE TRANSCRIPTION PROTEIN
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PA1374
    Mutation: YES
    Organism Scientific: PSEUDOMONAS AERUGINOSA PAO1
    Organism Taxid: 208964
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): AB          
Biological Unit 2 (1x):   CD        
Biological Unit 3 (1x):     EF      
Biological Unit 4 (1x):       GH    
Biological Unit 5 (1x):         IJ  
Biological Unit 6 (1x):           KL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 87)

Asymmetric Unit (4, 87)
No.NameCountTypeFull Name
1GOL12Ligand/IonGLYCEROL
2MSE60Mod. Amino AcidSELENOMETHIONINE
3NA11Ligand/IonSODIUM ION
4PO44Ligand/IonPHOSPHATE ION
Biological Unit 1 (3, 15)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2MSE10Mod. Amino AcidSELENOMETHIONINE
3NA-1Ligand/IonSODIUM ION
4PO41Ligand/IonPHOSPHATE ION
Biological Unit 2 (3, 13)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE10Mod. Amino AcidSELENOMETHIONINE
3NA-1Ligand/IonSODIUM ION
4PO41Ligand/IonPHOSPHATE ION
Biological Unit 3 (2, 11)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2MSE10Mod. Amino AcidSELENOMETHIONINE
3NA-1Ligand/IonSODIUM ION
4PO41Ligand/IonPHOSPHATE ION
Biological Unit 4 (2, 12)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE10Mod. Amino AcidSELENOMETHIONINE
3NA-1Ligand/IonSODIUM ION
4PO4-1Ligand/IonPHOSPHATE ION
Biological Unit 5 (2, 12)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE10Mod. Amino AcidSELENOMETHIONINE
3NA-1Ligand/IonSODIUM ION
4PO4-1Ligand/IonPHOSPHATE ION
Biological Unit 6 (3, 13)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE10Mod. Amino AcidSELENOMETHIONINE
3NA-1Ligand/IonSODIUM ION
4PO41Ligand/IonPHOSPHATE ION

(-) Sites  (27, 27)

Asymmetric Unit (27, 27)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETRP A:23 , TRP A:24 , ARG A:56BINDING SITE FOR RESIDUE NA A 201
02AC2SOFTWAREGLU A:22 , SER A:25 , PHE A:89 , HOH A:360BINDING SITE FOR RESIDUE GOL A 202
03AC3SOFTWARETRP B:23 , TRP B:24 , ARG B:56 , HOH B:311 , HOH B:377BINDING SITE FOR RESIDUE NA B 201
04AC4SOFTWAREASN B:58 , VAL B:61 , ARG B:68 , HOH B:338 , SER C:118 , GLY C:119BINDING SITE FOR RESIDUE PO4 B 202
05AC5SOFTWAREVAL A:20 , GLU A:22 , PHE A:96 , GLU B:22 , SER B:25 , PHE B:89 , GOL B:204BINDING SITE FOR RESIDUE GOL B 203
06AC6SOFTWAREGLY A:21 , HOH A:360 , GLY B:21 , GLU B:22 , GOL B:203BINDING SITE FOR RESIDUE GOL B 204
07AC7SOFTWAREARG B:38 , PHE B:39 , TYR B:71 , ARG B:77 , TYR B:78BINDING SITE FOR RESIDUE GOL B 205
08AC8SOFTWAREGLU C:22 , SER C:25 , PHE C:89BINDING SITE FOR RESIDUE GOL C 201
09AC9SOFTWARETRP D:23 , TRP D:24 , ARG D:56BINDING SITE FOR RESIDUE NA D 201
10BC1SOFTWAREARG C:19 , GLY D:64 , HIS D:103 , HOH D:341BINDING SITE FOR RESIDUE PO4 D 202
11BC2SOFTWAREVAL C:20 , GLU D:22 , SER D:25BINDING SITE FOR RESIDUE GOL D 203
12BC3SOFTWARETRP E:23 , TRP E:24 , ARG E:56BINDING SITE FOR RESIDUE NA E 201
13BC4SOFTWARETRP F:23 , TRP F:24 , ARG F:56BINDING SITE FOR RESIDUE NA F 201
14BC5SOFTWAREASN F:58 , ARG F:68 , GLY H:119BINDING SITE FOR RESIDUE PO4 F 202
15BC6SOFTWARETRP G:23 , TRP G:24 , HOH G:306BINDING SITE FOR RESIDUE NA G 201
16BC7SOFTWAREGLU G:22 , SER G:25 , ALA G:59 , LEU G:60 , HOH G:320 , HOH G:329 , VAL H:20BINDING SITE FOR RESIDUE GOL G 202
17BC8SOFTWARETRP H:23 , TRP H:24 , ARG H:56BINDING SITE FOR RESIDUE NA H 201
18BC9SOFTWAREGLU H:22 , SER H:25 , PHE H:89 , HOH H:319BINDING SITE FOR RESIDUE GOL H 202
19CC1SOFTWAREGLU I:22 , TRP I:23 , TRP I:24 , ARG I:56 , HOH I:358BINDING SITE FOR RESIDUE NA I 201
20CC2SOFTWAREGLU I:22 , SER I:25 , PHE I:89BINDING SITE FOR RESIDUE GOL I 202
21CC3SOFTWARETRP J:23 , TRP J:24 , HOH J:305BINDING SITE FOR RESIDUE NA J 201
22CC4SOFTWAREVAL I:20 , GLU J:22 , SER J:25 , PHE J:89 , HOH J:323 , HOH J:353BINDING SITE FOR RESIDUE GOL J 202
23CC5SOFTWARETRP K:23 , ARG K:56BINDING SITE FOR RESIDUE NA K 201
24CC6SOFTWARESER I:118 , GLY I:119 , ASN K:58 , ARG K:68BINDING SITE FOR RESIDUE PO4 K 202
25CC7SOFTWAREGLU K:22 , PHE K:89 , VAL L:20 , GLU L:22BINDING SITE FOR RESIDUE GOL K 203
26CC8SOFTWARETRP L:23 , TRP L:24BINDING SITE FOR RESIDUE NA L 201
27CC9SOFTWAREGLU L:22 , SER L:25 , PHE L:89 , HOH L:318BINDING SITE FOR RESIDUE GOL L 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GCV)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric Unit
No.Residues
1Arg A:74 -Pro A:75
2Arg B:74 -Pro B:75
3Arg F:74 -Pro F:75
4Ala F:105 -Gln F:106
5Arg H:74 -Pro H:75
6Ala I:105 -Gln I:106
7Arg K:74 -Pro K:75

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GCV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GCV)

(-) Exons   (0, 0)

(no "Exon" information available for 4GCV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:145
                                                                                                                                                                                 
               SCOP domains d4gcva_ A: automated matches                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh.hhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeee......eeeeehhhhhhhhhhhhhhhhhhhh..hhhhh.eeeee......eeeeeeee....eee...eeeee....hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gcv A  11 CPIARSLERVGEWWSILImRDALQGLRRFDEFSRSLDIAPNmLTRRLNALVEAGLLERQPYSQRPRYQYVPTAKGEDFRVVLmAFVAWGNRHYAQQGQSVQLVERTSGRPVRSFmAALADGRTVPLEQCTVQAGPAASEEmRQRL 156
                                    20        30        40        50 |      60        70    ||  81        91  |    101       111       121    |  131       141       151|    
                                             29-MSE                 52-MSE                 75|               94-MSE                         126-MSE                   152-MSE
                                                                                            77                                                                               


Chain B from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains d4gcvb_ B: automated matches                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.hhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeeeee....eeeeeehhhhhhhhhhhhhhhhhhhh........eeeee......eeeeeeee....eee...eeeee....hhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gcv B  11 CPIARSLERVGEWWSILImRDALQGLRRFDEFSRSLDIAPNmLTRRLNALVEAGLLERQPYSQRPLRYQYVPTAKGEDFRVVLmAFVAWGNRHYAQQGQSVQLVERTSGRPVRSFmAALADGRTVPLEQCTVQAGPAASEEmRQRL 156
                                    20        30        40        50 |      60        70        80        90   |   100       110       120     | 130       140       150 |    
                                             29-MSE                 52-MSE                                    94-MSE                         126-MSE                   152-MSE


Chain C from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains d4gcvc_ C: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.hhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee....eeeehhhhhhhhhhhhhhhhhhhh..hhhhh.eeeee......eeeeeeee....eee...eeeee....hhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gcv C  11 CPIARSLERVGEWWSILImRDALQGLRRFDEFSRSLDIAPNmLTRRLNALVEAGLLERQPYSYQYVPTAKGEDFRVVLmAFVAWGNRHYAQQGQSVQLVERTSGRPVRSFmAALADGRTVPLEQCTVQAGPAASEEmRQRL 156
                                    20        30        40        50 |      60        70 ||     85        95       105       115       125|      135       145      |155 
                                             29-MSE                 52-MSE              72|              94-MSE                         126-MSE                   152-MSE
                                                                                         78                                                                              


Chain D from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains d4gcvd_ D: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.hhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee....eeeehhhhhhhhhhhhhhhhhhhh..hhhhh.eeeee......eeeeeeee....eehhh.eeeee....hhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gcv D  11 CPIARSLERVGEWWSILImRDALQGLRRFDEFSRSLDIAPNmLTRRLNALVEAGLLERQPYSYQYVPTAKGEDFRVVLmAFVAWGNRHYAQQGQSVQLVERTSGRPVRSFmAALADGRTVPLEQCTVQAGPAASEEmRQRL 156
                                    20        30        40        50 |      60        70 ||     85        95       105       115       125|      135       145      |155 
                                             29-MSE                 52-MSE              72|              94-MSE                         126-MSE                   152-MSE
                                                                                         78                                                                              


Chain E from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                              
               SCOP domains d4gcve_ E: automated matches                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.hhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee.....eeeehhhhhhhhhhhhhhhhhhhh........eeeee......eeeeeeee....eee...eeeee....hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gcv E  11 CPIARSLERVGEWWSILImRDALQGLRRFDEFSRSLDIAPNmLTRRLNALVEAGLLERQPYSQYQYVPTAKGEDFRVVLmAFVAWGNRHYAQQGQSVQLVERTSGRPVRSFmAALADGRTVPLEQCTVQAGPAASEEmRQRL 156
                                    20        30        40        50 |      60        70  ||    84        94       104       114       124 |     134       144       154  
                                             29-MSE                 52-MSE               73|              94-MSE                         126-MSE                   152-MSE
                                                                                          78                                                                              


Chain F from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains d4gcvf_ F: automated matches                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.hhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeee.......eeeeehhhhhhhhhhhhhhhhhhhh........eeeee......eeeeeeee....eee...eeeee....hhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gcv F  11 CPIARSLERVGEWWSILImRDALQGLRRFDEFSRSLDIAPNmLTRRLNALVEAGLLERQPYSQRPLRYQYVPTAKGEDFRVVLmAFVAWGNRHYAQQGQSVQLVERTSGRPVRSFmAALADGRTVPLEQCTVQAGPAASEEmRQRL 156
                                    20        30        40        50 |      60        70        80        90   |   100       110       120     | 130       140       150 |    
                                             29-MSE                 52-MSE                                    94-MSE                         126-MSE                   152-MSE


Chain G from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains d4gcvg_ G: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.hhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee....eeeehhhhhhhhhhhhhhhhhhhh..hhhhh.eeeee......eeeeeeee....eehhh.eeeee....hhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gcv G  11 CPIARSLERVGEWWSILImRDALQGLRRFDEFSRSLDIAPNmLTRRLNALVEAGLLERQPYSYQYVPTAKGEDFRVVLmAFVAWGNRHYAQQGQSVQLVERTSGRPVRSFmAALADGRTVPLEQCTVQAGPAASEEmRQRL 156
                                    20        30        40        50 |      60        70 ||     85        95       105       115       125|      135       145      |155 
                                             29-MSE                 52-MSE              72|              94-MSE                         126-MSE                   152-MSE
                                                                                         78                                                                              


Chain H from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains d4gcvh_ H: automated matches                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.hhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeeeee....eeeeeehhhhhhhhhhhhhhhhhhh.........eeeee......eeeeeeee....eee...eeeee....hhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gcv H  11 CPIARSLERVGEWWSILImRDALQGLRRFDEFSRSLDIAPNmLTRRLNALVEAGLLERQPYSQRPLRYQYVPTAKGEDFRVVLmAFVAWGNRHYAQQGQSVQLVERTSGRPVRSFmAALADGRTVPLEQCTVQAGPAASEEmRQRL 156
                                    20        30        40        50 |      60        70        80        90   |   100       110       120     | 130       140       150 |    
                                             29-MSE                 52-MSE                                    94-MSE                         126-MSE                   152-MSE


Chain I from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains d4gcvi_ I: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.hhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee....eeeehhhhhhhhhhhhhhhhhhhh........eeeee......eeeeeeee....eee...eeeee....hhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gcv I  11 CPIARSLERVGEWWSILImRDALQGLRRFDEFSRSLDIAPNmLTRRLNALVEAGLLERQPYSYQYVPTAKGEDFRVVLmAFVAWGNRHYAQQGQSVQLVERTSGRPVRSFmAALADGRTVPLEQCTVQAGPAASEEmRQRL 156
                                    20        30        40        50 |      60        70 ||     85        95       105       115       125|      135       145      |155 
                                             29-MSE                 52-MSE              72|              94-MSE                         126-MSE                   152-MSE
                                                                                         78                                                                              


Chain J from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains d4gcvj_ J: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.hhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee....eeeehhhhhhhhhhhhhhhhhhhh........eeeee......eeeeeeee....eehhh.eeeee....hhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gcv J  11 CPIARSLERVGEWWSILImRDALQGLRRFDEFSRSLDIAPNmLTRRLNALVEAGLLERQPYSYQYVPTAKGEDFRVVLmAFVAWGNRHYAQQGQSVQLVERTSGRPVRSFmAALADGRTVPLEQCTVQAGPAASEEmRQRL 156
                                    20        30        40        50 |      60        70 ||     85        95       105       115       125|      135       145      |155 
                                             29-MSE                 52-MSE              72|              94-MSE                         126-MSE                   152-MSE
                                                                                         78                                                                              


Chain K from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains d4gcvk_ K: automated matches                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.hhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeee.......eeeeehhhhhhhhhhhhhhhhhhhh..hhhhh.eeeee......eeeeeeee....eee...eeeee....hhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gcv K  11 CPIARSLERVGEWWSILImRDALQGLRRFDEFSRSLDIAPNmLTRRLNALVEAGLLERQPYSQRPLRYQYVPTAKGEDFRVVLmAFVAWGNRHYAQQGQSVQLVERTSGRPVRSFmAALADGRTVPLEQCTVQAGPAASEEmRQRL 156
                                    20        30        40        50 |      60        70        80        90   |   100       110       120     | 130       140       150 |    
                                             29-MSE                 52-MSE                                    94-MSE                         126-MSE                   152-MSE


Chain L from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains d4gcvl_ L: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.hhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee....eeeehhhhhhhhhhhhhhhhhhhh........eeeee......eeeeeeee....eee...eeeee....hhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gcv L  11 CPIARSLERVGEWWSILImRDALQGLRRFDEFSRSLDIAPNmLTRRLNALVEAGLLERQPYSYQYVPTAKGEDFRVVLmAFVAWGNRHYAQQGQSVQLVERTSGRPVRSFmAALADGRTVPLEQCTVQAGPAASEEmRQRL 156
                                    20        30        40        50 |      60        70 ||     85        95       105       115       125|      135       145      |155 
                                             29-MSE                 52-MSE              72|              94-MSE                         126-MSE                   152-MSE
                                                                                         78
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GCV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GCV)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4GCV)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ala F:105 - Gln F:106   [ RasMol ]  
    Ala I:105 - Gln I:106   [ RasMol ]  
    Arg A:74 - Pro A:75   [ RasMol ]  
    Arg B:74 - Pro B:75   [ RasMol ]  
    Arg F:74 - Pro F:75   [ RasMol ]  
    Arg H:74 - Pro H:75   [ RasMol ]  
    Arg K:74 - Pro K:75   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]
    Biological Unit 5  [ Jena3D ]
    Biological Unit 6  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format | Biol. Unit 5 PNG format | Biol. Unit 6 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4gcv
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q9I3X0_PSEAE | Q9I3X0
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q9I3X0_PSEAE | Q9I3X0
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 4GCV)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4GCV)