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(-) Description

Title :  HUMAN ACYL-COA THIOESTERASES 4 IN COMPLEX WITH UNDECAN-2-ONE-COA INHIBITOR
 
Authors :  K. Lim, M. C. Pathak, O. Herzberg
Date :  25 Jul 12  (Deposition) - 29 Aug 12  (Release) - 31 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hotdog Fold, Acyl Coa Hydrolase; Akt C-Terminal Modulating Protein, Acyl-Coa, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Zhao, K. Lim, A. Choudry, J. A. Latham, M. C. Pathak, D. Dominguez, L. Luo, O. Herzberg, D. Dunaway-Mariano
Correlation Of Structure And Function In The Human Hotdog-Fold Enzyme Hthem4.
Biochemistry V. 51 6490 2012
PubMed-ID: 22871024  |  Reference-DOI: 10.1021/BI300968N
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - THIOESTERASE SUPERFAMILY MEMBER 4
    Chains: A, B
    EC Number: 3.1.2.20
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-23A
    Expression System Strain: BL21CODON PLUS(DE3) RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 40-240
    Gene: CTMP, THEM4
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CARBOXYL-TERMINAL MODULATOR PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
10ET3Ligand/Ion[[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-4-OXIDANYL-3-PHOSPHONOOXY-OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL][(3R)-2,2-DIMETHYL-3-OXIDANYL-4-OXIDANYLIDENE-4-[[3-OXIDANYLIDENE-3-[2-[(2R)-2-OXIDANYLUNDECYL]SULFANYLETHYLAMINO]PROPYL]AMINO]BUTYL]HYDROGEN PHOSPHATE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:74 , ASP A:161 , MET A:176 , THR A:177 , ALA A:178 , ARG A:206 , LYS A:207 , LEU A:229 , ILE A:231 , HOH A:401 , HOH A:419 , HOH A:455 , PRO B:147 , HIS B:152 , GLY B:153 , ASN B:183 , TYR B:184 , LYS B:185 , ARG B:186 , PRO B:187BINDING SITE FOR RESIDUE 0ET A 301
2AC2SOFTWAREGLY A:146 , PRO A:147 , HIS A:152 , GLY A:153 , ASN A:183 , TYR A:184 , LYS A:185 , ARG A:186 , PRO A:187 , MET B:176 , THR B:177 , ALA B:178 , ARG B:206 , LYS B:207 , LEU B:229 , ILE B:231 , LEU B:233 , HIS B:244 , HOH B:1012 , HOH B:1019 , HOH B:1024 , HOH B:1048 , HOH B:1061 , HOH B:1098 , HOH B:1112BINDING SITE FOR RESIDUE 0ET B 601
3AC3SOFTWARETRP B:86 , MET B:169 , MET B:170 , GLY B:173 , GLU B:242BINDING SITE FOR RESIDUE 0ET B 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GAH)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Thr B:240 -Leu B:241

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GAH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GAH)

(-) Exons   (0, 0)

(no "Exon" information available for 4GAH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhh.....eee.........hhhhh......eeeeeeee....eeeeeeee.hhhh......hhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeee........eeeeeeeeeeee..eeeeeeeeee.....eeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gah A  43 LKDCSVPNPSWNKDLRLLFDQFMKKCEDGSWKRLPSYKRSQAQLFTRSFDDGLGFEYVMFYNDIEKRMVCLFQGGPYLEGPPGFIHGGAIATMIDATVGMCAMMAGGIVMTANLNINYKRPIPLCSVVMINSQLDKVEGRKFFVSCNVQSVDEKTLYSEATSLFIKLNPAKS 238
                                    52        62        72       106       116       126       136       146       156       166       176       186       196       206       216       226       236  
                                                                 81|                                                                                                                                    
                                                                 106                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:195
                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhh.....ee.......hhhhhhhhhhhh........hhhhh......eeeeeeee....eeeeeeee.hhhh......hhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeee........eeeeeeeeeeee..eeeeeeeeee.....eeeeeeeeeee............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gah B  43 LKDCSVPNPSWNKDLRLLFDQFMKKCEDGSWKRLPSYKRTPTEWIQDFKTHFLDPKSQAQLFTRSFDDGLGFEYVMFYNDIEKRMVCLFQGGPYLEGPPGFIHGGAIATMIDATVGMCAMMAGGIVMTANLNINYKRPIPLCSVVMINSQLDKVEGRKFFVSCNVQSVDEKTLYSEATSLFIKLNPAKSLTLEHH 244
                                    52        62        72        82        92     ||109       119       129       139       149       159       169       179       189       199       209       219       229       239     
                                                                                  98|                                                                                                                                          
                                                                                  106
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GAH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GAH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GAH)

(-) Gene Ontology  (19, 19)

Asymmetric/Biological Unit(hide GO term definitions)

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    Thr B:240 - Leu B:241   [ RasMol ]  
 

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  THEM4_HUMAN | Q5T1C6
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 Related Entries

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UniProtKB/Swiss-Prot
        THEM4_HUMAN | Q5T1C6: 4ae8

(-) Related Entries Specified in the PDB File

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