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(-) Description

Title :  CRYSTAL STRUCTURE OF NEWCASTLE DISEASE VIRUS MATRIX PROTEIN
 
Authors :  G. Meng, M. G. Rossmann
Date :  10 Jul 12  (Deposition) - 15 Aug 12  (Release) - 12 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.21
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Beta-Strand, Virus Assembly, Membrane, Matrix Protein, Viurs, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. J. Battisti, G. Meng, D. C. Winkler, L. W. Mcginnes, P. Plevka, A. C. Steven, T. G. Morrison, M. G. Rossmann
Structure And Assembly Of A Paramyxovirus Matrix Protein.
Proc. Natl. Acad. Sci. Usa V. 109 13996 2012
PubMed-ID: 22891297  |  Reference-DOI: 10.1073/PNAS.1210275109

(-) Compounds

Molecule 1 - MATRIX PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: M
    Organism Common: NDV
    Organism Scientific: NEWCASTLE DISEASE VIRUS
    Organism Taxid: 11177
    Strain: CHICKEN/AUSTRALIA-VICTORIA/32

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4G1L)

(-) Sites  (0, 0)

(no "Site" information available for 4G1L)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4G1L)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Ala A:14 -Leu A:15
2Phe A:23 -Pro A:24
3Pro A:82 -Lys A:83
4Lys A:250 -Lys A:251
5Phe B:23 -Pro B:24
6Lys B:250 -Lys B:251

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G1L)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4G1L)

(-) Exons   (0, 0)

(no "Exon" information available for 4G1L)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:330
                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhh............eeeeee..........eeeeeeeeeeeee...eeeeeeeeeeeeee...hhhhhhhhhhhheeeeeeee...eeeeeeeee.hhhhh.hhhhhhheeeeehhhhh.hhhhh....eeeeeeeeeeeeee.........hhhhh....eeeeeeeeeeee.....hhhhhhhee....eeeeeeeeeeeee.........hhhhhhhhhhhhheeeeeee...eeeeeee.......hhhhh....eeeeehhhhhhhhhhhhhhh.eeeeeeeeeeee.hhhhhhhh..eeeee.ee.......ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4g1l A  14 ALPSSNLLAFPIVLQDIGQIAPQYRIQRLDSWTDSKEDSVFITTYGFIFQVPKHELLSAAMLCLGSVPNVGDLVELARACLTMVVTCKKSATDTERMVFSVVQAPQVLQSCRVVANKYSSVNAVKHVKAPEKIPGSGTLEYKVNFVSLTVVPRKDYKIPTAALKVSGSSLYNLALNVTIDVEVDPKSPLVKSLSKSDSGYYANLFLHIGLMSTVDKKGKKVTFDKLERKIRRLDLSVGLSDVLGPSVLVKARGARTRLLAPFFSSSGTACYPISNASPQVAKILWSQTARLRSVKVIIQAGTQRAVAVTADHEVTSTKIEKRIAKYNPFK 363
                                    23       |37        47        57        67||      90       100       110       120       130       140       150       160       170       180    || 191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351 ||    363
                                            31|                              68|                                                                                                    185|                                                                                                                                                                   353|       
                                             36                               82                                                                                                     187                                                                                                                                                                    356       


Chain B from PDB  Type:PROTEIN  Length:334
                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhh.........eeeeee.........eeeeeeeeeeeee...eeeeeeeeeeeeee...hhhhhhhhhh..eeeeeeee...eeeeeeeee.hhhhh.hhhhhh.eeeeehhhhh.hhhhh.....eeeeeeeeeeeeee.hhh..............eeeeeeeeeeee.....hhhhhhhee....eeeeeeeeeeeee.........hhhhhhhhhhhhheeeeee.....eeeeee.......hhhhh....eeeeehhhhhhhhhhhhhhh.eeeeeeeeeeee.hhhhhh....eeeee.ee.........ee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g1l B   8 GLYFDSALPSSNLLAFPIVLQQIAPQYRIQRLDSWTDSKEDSVFITTYGFIFQVGHELLSAAMLCLGSVPNVGDLVELARACLTMVVTCKKSATDTERMVFSVVQAPQVLQSCRVVANKYSSVNAVKHVKAPEKIPGSGTLEYKVNFVSLTVVPRKDVYKIPTAALKVSGSSLYNLALNVTIDVEVDPKSPLVKSLSKSDSGYYANLFLHIGLMSTVDKKGKKVTFDKLERKIRRLDLSVGLSDVLGPSVLVKARGARTRLLAPFFSSSGTACYPISNASPQVAKILWSQTARLRSVKVIIQAGTQRAVAVTADHEVTSTKIEKRHTIAKYNPF 362
                                    17        27||      44        54        64    ||  88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358    
                                               28|                               69|                                                                                                                                                                                                                                                                                      
                                                36                                84
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4G1L)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G1L)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G1L)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 4g1l)
 
  Sites
(no "Sites" information available for 4g1l)
 
  Cis Peptide Bonds
    Ala A:14 - Leu A:15   [ RasMol ]  
    Lys A:250 - Lys A:251   [ RasMol ]  
    Lys B:250 - Lys B:251   [ RasMol ]  
    Phe A:23 - Pro A:24   [ RasMol ]  
    Phe B:23 - Pro B:24   [ RasMol ]  
    Pro A:82 - Lys A:83   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MATRX_NDVA | P11206: 4g1g 4g1o

(-) Related Entries Specified in the PDB File

4g1g 4g1o