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(-) Description

Title :  CRYSTAL STRUCTURE OF ARABIDOPSIS AGO1 IN COMPLEX WITH AMP
 
Authors :  F. Frank, J. Hauver, N. Sonenberg, B. Nagar
Date :  10 Jul 12  (Deposition) - 25 Jul 12  (Release) - 12 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Mid Domain, Gene Regulation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Frank, J. Hauver, N. Sonenberg, B. Nagar
Arabidopsis Argonaute Mid Domains Use Their Nucleotide Specificity Loop To Sort Small Rnas.
Embo J. V. 31 3588 2012
PubMed-ID: 22850669  |  Reference-DOI: 10.1038/EMBOJ.2012.204

(-) Compounds

Molecule 1 - PROTEIN ARGONAUTE 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 DE3
    Expression System Taxid: 469008
    Fragment: MID DOMAIN, UNP RESIDUES 593-738
    Gene: AGO1, AT1G48410, F11A17.3, T1N15.2
    Organism Common: MOUSE-EAR CRESS,THALE-CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1AMP1Ligand/IonADENOSINE MONOPHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:687 , TYR A:691 , LYS A:695 , SER A:706 , GLN A:707 , CYS A:708 , LEU A:710 , LYS A:728 , LYS A:732 , HOH A:1017 , HOH A:1018 , HOH A:1020BINDING SITE FOR RESIDUE AMP A 801

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4G0Y)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4G0Y)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G0Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4G0Y)

(-) Exons   (0, 0)

(no "Exon" information available for 4G0Y)

(-) Sequences/Alignments

Asymmetric/Biological Unit
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:147
                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee..ee..eeeee.....hhhhhhhhhhhhhhhhhhh..ee........ee.hhhhhhhhhhhhhhhhhhh........eeeeee.....hhhhhhhhhhhhh....eeeeehhhhhhhhhhhhhhhhhhhhhhh..ee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g0y A 594 SNKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATSKLSQGKEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 740
                                   603       613       623       633       643       653       663       673       683       693       703       713       723       733
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4G0Y)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G0Y)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G0Y)

(-) Gene Ontology  (34, 34)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AGO1_ARATH | O04379: 3vna 3vnb 4g0p 4g0q 4g0x 4g0z

(-) Related Entries Specified in the PDB File

4g0m CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA AGO2 MID DOMAIN
4g0o CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA AGO5 MID DOMAIN
4g0p STRUCTURE OF ARABIDOPSIS THALIANA AGO1 MID DOMAIN IN COMPLEX WITH UMP
4g0q STRUCTURE OF ARABIDOPSIS THALIANA AGO1 MID DOMAIN IN COMPLEX WITH CMP
4g0x CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA AGO1 MID DOMAIN
4g0z STRUCTURE OF ARABIDOPSIS THALIANA AGO1 MID DOMAIN IN COMPLEX WITH GMP