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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN TIRAP TIR-DOMAIN
 
Authors :  J. R. Woo, S. Kim, S. E. Shoelson, S. Park
Date :  06 Jul 12  (Deposition) - 29 May 13  (Release) - 29 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A  (1x)
Biol. Unit 3:  B  (1x)
Keywords :  Tirap, Scaffold, Myd88, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. R. Woo, S. Kim, S. E. Shoelson, S. Park
X-Ray Crystallographic Structure Of Tir-Domain From The Human Tir-Domain Containing Adaptor Protein/Myd88 Adaptor-Like Protein (Tirap/Mal)
Bull. Korean Chem. Soc. V. 33 3091 2013
PubMed: search  |  Reference-DOI: 10.5012/BKCS.2012.33.9.3091

(-) Compounds

Molecule 1 - TOLL/INTERLEUKIN-1 RECEPTOR DOMAIN-CONTAINING ADAPTER PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: TIR DOMAIN, UNP RESIDUES 72-221
    Gene: TIRAP, MAL
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TIR DOMAIN-CONTAINING ADAPTER PROTEIN, ADAPTOR PROTEIN WYATT, MYD88 ADAPTER-LIKE PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (1x): A 
Biological Unit 3 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4FZ5)

(-) Sites  (0, 0)

(no "Site" information available for 4FZ5)

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:89 -A:134
2A:142 -A:174
3B:89 -B:134
4B:142 -B:174

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Cys A:134 -Gln A:135

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FZ5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FZ5)

(-) Exons   (0, 0)

(no "Exon" information available for 4FZ5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:116
                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh.....ee....hhhhhhhhhhhhhh......ee.......eeeeeehhhhhhhhhhhhhhhhhhh..eeeeee..................hhhhhhhhhhhh.hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 4fz5 A  80 SRWSKDYDVCVCHSEEDLVAAQDLVSYLEGSGAISELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEGCTIPLLSGLSRAAYPPELRFVDGRGPDGGFRQVKEAVMRYLQTL 220
                                    89        99       109|| ||  136       146       156       166||     181       191 ||    204       214      
                                                        110| ||                                 167|                 193|                       
                                                         127 ||                                  173                  197                       
                                                           129|                                                                                 
                                                            131                                                                                 


Chain B from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........ee....hhhhhhhhhh.................eeeee....................eeeee................ee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 4fz5 B  79 SSRWSKDYDVCVCHSEEDLVAAQDLVSYLEGVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTCTIPLLSGLSRAAYPPLRFMYYVDGRGPDGGFRQVKEAVMRYLQTL 220
                                    88        98       108||     138       148       158       175       185   ||  196       206       216    
                                                        109|                                 166|            189|                             
                                                         130                                  174             191
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FZ5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FZ5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FZ5)

(-) Gene Ontology  (50, 50)

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  Cis Peptide Bonds
    Cys A:134 - Gln A:135   [ RasMol ]  
 
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  TIRAP_HUMAN | P58753
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TIRAP_HUMAN | P58753: 2ndh 2y92 3ub2 3ub3 3ub4 4lqd 5t7q

(-) Related Entries Specified in the PDB File

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