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(-) Description

Title :  CRYSTAL STRUCTURE OF THE Z-DNA HEXAMER CGCGCG AT 500 MM CACL2
 
Authors :  T. Chatake, T. Sunami
Date :  27 Jun 12  (Deposition) - 15 May 13  (Release) - 15 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.30
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Z-Dna, Ca2+ Binding, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Chatake, T. Sunami
Direct Interactions Between Z-Dna And Alkaline Earth Cations, Discovered In The Presence Of High Concentrations Of Mgcl2 And Cacl2
J. Inorg. Biochem. V. 124 15 2013
PubMed-ID: 23578858  |  Reference-DOI: 10.1016/J.JINORGBIO.2013.03.004

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*CP*GP*CP*G)-3')
    ChainsA
    EngineeredYES
    Other DetailsCHEMICAL SYNTHESIS
    SyntheticYES

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric Unit (2, 7)
No.NameCountTypeFull Name
1CA5Ligand/IonCALCIUM ION
2CL2Ligand/IonCHLORIDE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDG A:2 , DC A:5 , HOH A:201 , HOH A:202 , HOH A:203 , HOH A:204BINDING SITE FOR RESIDUE CA A 101
2AC2SOFTWAREDG A:2 , DC A:5 , HOH A:205 , HOH A:206 , HOH A:207 , HOH A:208 , HOH A:209BINDING SITE FOR RESIDUE CA A 102
3AC3SOFTWAREDC A:3 , DG A:4 , HOH A:210 , HOH A:211 , HOH A:212 , HOH A:213BINDING SITE FOR RESIDUE CA A 103
4AC4SOFTWAREDC A:3 , DG A:4 , HOH A:214 , HOH A:215 , HOH A:216 , HOH A:217 , HOH A:218BINDING SITE FOR RESIDUE CA A 104
5AC5SOFTWAREDC A:3 , DG A:4 , HOH A:215 , HOH A:216 , HOH A:219 , HOH A:220 , HOH A:221 , HOH A:222BINDING SITE FOR RESIDUE CA A 105
6AC6SOFTWAREDG A:2 , DC A:3 , HOH A:209BINDING SITE FOR RESIDUE CL A 106
7AC7SOFTWAREDG A:4 , DC A:5 , HOH A:216 , HOH A:220 , HOH A:222BINDING SITE FOR RESIDUE CL A 107

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FS6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FS6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4FS6)

(-) Sequences/Alignments

Asymmetric Unit
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Chain A from PDB  Type:DNA  Length:6
                                    
                   4fs6 A 1 CGCGCG 6

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FS6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FS6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FS6)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4FS6)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

4fs5