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(-) Description

Title :  CRYSTAL STRUCTURE OF 5-HYDROXY-2'-DEOXYCYTIDINE BASE PAIRED WITH 2'-DEOXYGUANOSINE IN DICKERSON DREW DODECAMER
 
Authors :  M. W. Szulik, B. Nocek, A. Joachimiak, M. P. Stone
Date :  09 May 12  (Deposition) - 05 Jun 13  (Release) - 05 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  5-Hydroxy-Dc, Modified Dickerson, 5-Hydroxy-2'-Deoxycytidine, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. W. Szulik, B. Nocek, A. Joachimiak, M. P. Stone
Crystal Structure Of 5-Hydroxy-2'-Deoxycytidine Base Paired With 2'-Deoxyguanosine In Dickerson Drew Dodecamer
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(5OC)P*GP*CP*G)-3')
    ChainsA, B
    EngineeredYES
    Organism ScientificSYNTHETIC
    Organism Taxid32630
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
15OC2Mod. Nucleotide2'-DEOXY-5-HYDROXYCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
2MG1Ligand/IonMAGNESIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:233 , HOH A:234 , HOH B:101 , HOH B:129 , HOH B:130 , HOH B:131BINDING SITE FOR RESIDUE MG A 101

(-) SS Bonds  (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:12
                                           
                  4f3u A  1 CGCGAATTxGCG 12
                                    10  
                                    9-5OC

Chain B from PDB  Type:DNA  Length:12
                                           
                  4f3u B 13 CGCGAATTxGCG 24
                                    22  
                                   21-5OC

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 Classification and Annotation

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436d