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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ROCO4 KINASE DOMAIN FROM D. DISCOIDEUM
 
Authors :  B. K. Gilsbach, I. R. Vetter, A. Wittinghofer, A. Kortholt
Date :  04 May 12  (Deposition) - 27 Jun 12  (Release) - 11 Jul 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Protein Kinase, Lrrk2, Roco, Atp-Binding, Nucleotide-Binding, Parkinson Disease, Serine/Threonine-Protein Kinase, Transferase, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. K. Gilsbach, F. Y. Ho, I. R. Vetter, P. J. Van Haastert, A. Wittinghofer, A. Kortholt
Roco Kinase Structures Give Insights Into The Mechanism Of Parkinson Disease-Related Leucine-Rich-Repeat Kinase 2 Mutations.
Proc. Natl. Acad. Sci. Usa V. 109 10322 2012
PubMed-ID: 22689969  |  Reference-DOI: 10.1073/PNAS.1203223109

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE ROCO4
    Chains: A
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX4T1 NTEV
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: ROCO4 KINASE DOMAIN, UNP RESIDUES 1018-1292
    Gene: DDB_G0288251, ROCO4
    Organism Common: SLIME MOLD
    Organism Scientific: DICTYOSTELIUM DISCOIDEUM
    Organism Taxid: 44689
    Strain: AX3
    Synonym: RAS OF COMPLEX PROTEINS AND C-TERMINAL OF ROC 4

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4F0G)

(-) Sites  (0, 0)

(no "Site" information available for 4F0G)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4F0G)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asn A:1147 -Pro A:1148

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4F0G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4F0G)

(-) Exons   (0, 0)

(no "Exon" information available for 4F0G)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                        
               SCOP domains d4f0ga_ A: automated matches                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeeeeee....eeeeeee.....eeeeee.......hhhhhhhhhhhhhhhhhhhh.........eeeee....eeeee.....hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..........hhh.eee..........eee....hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4f0g A 1016 SRLPTLADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEGLRPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 1292
                                  1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155      1165      1175   || 1199      1209      1219      1229      1239      1249      1259      1269      1279      1289   
                                                                                                                                                                                            1179|                                                                                                  
                                                                                                                                                                                             1194
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4F0G)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4F0G)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asn A:1147 - Pro A:1148   [ RasMol ]  
 

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  4f0g
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  ROCO4_DICDI | Q6XHB2
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  2.7.11.1
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  ROCO4_DICDI | Q6XHB2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ROCO4_DICDI | Q6XHB2: 4f0f 4f1m 4f1o 4f1t 4yzm 4yzn

(-) Related Entries Specified in the PDB File

4f0f THE SAME PROTEIN BOUND TO APPCP IN THE ACTIVE CONFORMATION
4f1m THE G1179S MUTANT PROTEIN BOUND TO APPCP IN THE ACTIVE CONFORMATION
4f1o THE L1178T MUTANT PROTEIN BOUND TO APPCP IN THE ACTIVE CONFORMATION
4f1t THE DAME PROTEIN BOUND TO THE ROCK INHIBITOR H1152