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(-) Description

Title :  CRYSTAL STRUCTURE OF ACETYLCHOLINE BINDING PROTEIN (ACHBP) FROM APLYSIA CALIFORNICA IN COMPLEX WITH ALPHA-CONOTOXIN BUIA
 
Authors :  T. T. Talley, A. S. Reger, C. Kim, B. Sankaran, K. Ho, P. Taylor, J. M. Mcin
Date :  02 May 12  (Deposition) - 08 May 13  (Release) - 19 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.49
Chains :  Asym./Biol. Unit :  A,B,C,D,E,K,L,M,N,O
Keywords :  Choline Binding Protein-Toxin Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. M. Filchakova, T. T. Talley, A. S. Reger, C. Kim, K. Ho, K. Han, P. Taylor, J. M. Mcintosh
Pairwise Interaction Of Alpha-Conotoxin Buia Pro6 With The Beta Subunit Of Nicotinic Acetylcholine Receptor
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SOLUBLE ACETYLCHOLINE RECEPTOR
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Common: HUMAN
    Expression System Plasmid: PFLAG-CMV-3
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 18-236
    Organism Common: CALIFORNIA SEA HARE
    Organism Scientific: APLYSIA CALIFORNICA
    Organism Taxid: 6500
    Synonym: ACHBP
 
Molecule 2 - ALPHA-CONOTOXIN BUIA
    Chains: K, L, M, N, O
    Engineered: YES
    Fragment: UNP RESIDUES 44-56
    Organism Common: BUBBLE CONE
    Organism Scientific: CONUS BULLATUS
    Organism Taxid: 89438
    Synonym: CONOTOXIN BU1.3
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric/Biological Unit : ABCDEKLMNO

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1MN1Ligand/IonMANGANESE (II) ION
2NH25Mod. Amino AcidAMINO GROUP

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLN B:57 , CYS K:13BINDING SITE FOR RESIDUE NH2 K 14
02AC2SOFTWAREARG A:59 , CYS L:13BINDING SITE FOR RESIDUE NH2 L 14
03AC3SOFTWAREASP E:159 , CYS M:13BINDING SITE FOR RESIDUE NH2 M 14
04AC4SOFTWAREMET D:116 , ALA N:9 , CYS N:13BINDING SITE FOR RESIDUE NH2 N 14
05AC5SOFTWAREGLN C:57 , ARG C:59 , CYS O:13BINDING SITE FOR RESIDUE NH2 O 14
06AC6SOFTWAREASP C:-3 , HIS C:1BINDING SITE FOR RESIDUE MN C 301
07AC7SOFTWAREGLN B:57 , MET B:116 , ILE B:118 , ASP B:164 , SER B:167 , TYR C:93 , SER C:146 , TRP C:147 , VAL C:148 , TYR C:149 , TYR C:188 , CYS C:191 , PRO C:192 , GLU C:193 , TYR C:195 , HOH C:438 , NH2 K:14BINDING SITE FOR CHAIN K OF ALPHA-CONOTOXIN BUIA
08AC8SOFTWARETHR A:36 , GLN A:57 , ARG A:59 , VAL A:108 , MET A:116 , ILE A:118 , ASP A:164 , SER A:166 , SER A:167 , TYR B:93 , SER B:146 , TRP B:147 , TYR B:149 , TYR B:188 , CYS B:190 , CYS B:191 , GLU B:193 , TYR B:195 , HOH B:329 , NH2 L:14BINDING SITE FOR CHAIN L OF ALPHA-CONOTOXIN BUIA
09AC9SOFTWARETYR A:93 , SER A:146 , TRP A:147 , VAL A:148 , TYR A:149 , TYR A:188 , CYS A:190 , CYS A:191 , PRO A:192 , GLU A:193 , TYR A:195 , TYR E:55 , GLN E:57 , ARG E:79 , VAL E:108 , MET E:116 , ILE E:118 , ASP E:164 , SER E:166 , SER E:167 , NH2 M:14BINDING SITE FOR CHAIN M OF ALPHA-CONOTOXIN BUIA
10BC1SOFTWAREGLN D:57 , ARG D:59 , VAL D:108 , MET D:116 , ILE D:118 , ASP D:164 , SER D:166 , SER D:167 , TYR E:93 , SER E:146 , TRP E:147 , VAL E:148 , TYR E:149 , TYR E:188 , CYS E:190 , CYS E:191 , PRO E:192 , GLU E:193 , TYR E:195 , HOH E:301 , NH2 N:14BINDING SITE FOR CHAIN N OF ALPHA-CONOTOXIN BUIA
11BC2SOFTWARESER A:189 , GLN C:57 , VAL C:108 , MET C:116 , ASP C:164 , SER C:167 , TYR D:93 , SER D:146 , TRP D:147 , VAL D:148 , TYR D:149 , TYR D:188 , CYS D:191 , GLU D:193 , TYR D:195 , HOH D:306 , NH2 O:14BINDING SITE FOR CHAIN O OF ALPHA-CONOTOXIN BUIA

(-) SS Bonds  (20, 20)

Asymmetric/Biological Unit
No.Residues
1A:127 -A:140
2A:190 -A:191
3B:127 -B:140
4B:190 -B:191
5C:127 -C:140
6C:190 -C:191
7D:127 -D:140
8D:190 -D:191
9E:127 -E:140
10E:190 -E:191
11K:2 -K:8
12K:3 -K:13
13L:2 -L:8
14L:3 -L:13
15M:2 -M:8
16M:3 -M:13
17N:2 -N:8
18N:3 -N:13
19O:2 -O:8
20O:3 -O:13

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Gly K:1 -Cys K:2
2Gly L:1 -Cys L:2
3Gly O:1 -Cys O:2

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EZ1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EZ1)

(-) Exons   (0, 0)

(no "Exon" information available for 4EZ1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:203
                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh...........eeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeee.hhhhhh...eeeee.hhh....eee.......ee....eeeee.eeeeee..eeeeeee...........eeeeeeeee.......eeee................eeeeeeeeeeeee........eeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ez1 A   0 LHSQANLMRLKSDLMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 207
                                     9   ||   24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204   
                                        13|                                                                                                                                                                                            
                                         19                                                                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:203
                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh.........eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.hhhhhh...eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeee................eeeeeeeeeeeeee......eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ez1 B   0 LHSQANLMRLKSDLFYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 207
                                     9    ||  24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204   
                                         14|                                                                                                                                                                                           
                                          20                                                                                                                                                                                           


Chain C from PDB  Type:PROTEIN  Length:207
                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh.........eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.hhhhhh...eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeee................eeeeeeeeeeeee........eeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ez1 C  -4 DDDKLHSQANLMRLKSDLFYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 207
                                     5        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       
                                             14|                                                                                                                                                                                           
                                              20                                                                                                                                                                                           


Chain D from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..........eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.hhhhhh...eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeee................eeeeeeeeeeeee........eeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ez1 D  -4 DDDKLHSQANLMRLKSDLFNYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 207
                                     5        15|       29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199        
                                              15|                                                                                                                                                                                           
                                               20                                                                                                                                                                                           


Chain E from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh..........eeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeee.hhhhhh...eeeee.hhh....eee.......ee....eeeee.eeeeee..eeeeeee...........eeeeeeeee.......eeeee...............eeeeeeeeeeeee........eeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ez1 E   2 SQANLMRLKSDLFMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 207
                                    11  ||    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205  
                                       14|                                                                                                                                                                                            
                                        19                                                                                                                                                                                            


Chain K from PDB  Type:PROTEIN  Length:14
                                              
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author ....hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                 4ez1 K   1 GCCSTPPCAVLYCx  14
                                    10   |
                                        14-NH2


Chain L from PDB  Type:PROTEIN  Length:14
                                              
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author ....hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                 4ez1 L   1 GCCSTPPCAVLYCx  14
                                    10   |
                                        14-NH2


Chain M from PDB  Type:PROTEIN  Length:14
                                              
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author ....hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                 4ez1 M   1 GCCSTPPCAVLYCx  14
                                    10   |
                                        14-NH2


Chain N from PDB  Type:PROTEIN  Length:14
                                              
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author ....hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                 4ez1 N   1 GCCSTPPCAVLYCx  14
                                    10   |
                                        14-NH2


Chain O from PDB  Type:PROTEIN  Length:14
                                              
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author ....hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                 4ez1 O   1 GCCSTPPCAVLYCx  14
                                    10   |
                                        14-NH2
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4EZ1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EZ1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EZ1)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CA1A_CONBU | P69657: 2i28 2ns3
UniProtKB/TrEMBL
        Q8WSF8_APLCA | Q8WSF8: 2br7 2br8 2byn 2byp 2byq 2byr 2bys 2c9t 2pgz 2ph9 2uz6 2w8f 2w8g 2wn9 2wnc 2wnj 2wnl 2wzy 2x00 2xnt 2xnu 2xnv 2xys 2xyt 2xz5 2xz6 2y54 2y56 2y57 2y58 2y7y 2ymd 2yme 3c79 3c84 3gua 3peo 3pmz 3sh1 3sio 3t4m 4aft 4bfq 4bqt 4dbm 4frr 4wv9 4xhe 4xk9 4zjs 4zk4 5ain 5brx 5bw2 5co5 5jme 5ke4 5kzu 5lxb 5syo 5tvc

(-) Related Entries Specified in the PDB File

2br8 CRYSTAL STRUCTURE OF APLYSIA CALIFORNICA ACHBP IN COMPLEX WITH ALPHA-CONOTOXIN PNIA
2byp CRYSTAL STRUCTURE OF APLYSIA CALIFORNICA ACHBP IN COMPLEX WITH ALPHA-CONOTOXIN IMI
2c79 CRYSTAL STRUCTURE OF APLYSIA CALIFORNICA ACHBP IN COMPLEX WITH THE NEONICOTINOID IMIDACLOPRID
2c84 CRYSTAL STRUCTURE OF A COMPLEX OF ACHBP FROM APLYSIA CALIFORNICA AND THE NEONICOTINOID THIACLOPRID
2c9t CRYSTAL STRUCTURE OF APLYSIA CALIFORNICA ACHBP IN COMPLEX WITH ALPHA-CONOTOXIN IMI
2i28 ALPHA-CONOTOXIN BUIA
2uz6 CRYSTAL STRUCTURE OF APLYSIA CALIFORNICA ACHBP IN COMPLEX WITH ALPHA-CONOTOXIN TXIA(A10L)