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(-) Description

Title :  THE CRYSTAL STRUCTURE OF PSY3-CSM2 COMPLEX FROM BUDDING YEAST
 
Authors :  Z. She, Z. Q. Gao, Y. H. Dong
Date :  18 Apr 12  (Deposition) - 01 Aug 12  (Release) - 01 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. She, Z. Q. Gao, Y. Liu, W. J. Wang, G. F. Liu, E. V. Shtykova, J. H. Xu, Y. H. Dong
Structural And Saxs Analysis Of The Budding Yeast Shu-Complex Proteins
Febs Lett. V. 586 2306 2012
PubMed-ID: 22749910  |  Reference-DOI: 10.1016/J.FEBSLET.2012.06.024

(-) Compounds

Molecule 1 - CHROMOSOME SEGREGATION IN MEIOSIS PROTEIN 2
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PCDFDUET
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CSM2, YIL132C
    Organism Common: YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
 
Molecule 2 - PLATINUM SENSITIVITY PROTEIN 3
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PCDFDUET
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PSY3, YLR376C, L8039.17
    Organism Common: YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4EQ6)

(-) Sites  (0, 0)

(no "Site" information available for 4EQ6)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EQ6)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Lys A:177 -Asn A:178
2Asp B:136 -Asn B:137

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EQ6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EQ6)

(-) Exons   (0, 0)

(no "Exon" information available for 4EQ6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:192
                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhh..eeeee..hhhhhhhhhhhhhh....eeeeeeee.....hhhhhhhhh...hhhhhhhhhheeeee..hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeehhhhhhhhhhh........hhhhhhhhhh..ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4eq6 A   1 MEYEDLELITIWPSPTKNKLCQFIKQNLSKEHVVTQLFFIDATSSFPLSQFQKLVPPTLPENVRIYENIRINTCLDLEELSAITVKLLQILSMNKINAQEPLKIILYINGLEVMFRNSQFKSSPQRSHELLRDTLLKLRVMGNDENENASIRTLLEFPKEQLLDYYLKKNRIKNGDSLAEYIWKYYADSLFE 213
                                    10        20        30        40        50        60        70        80        90       108       118       128       138       148       158       168       178|      201       211  
                                                                                                                             99|                                                                   178|                     
                                                                                                                             108                                                                    192                     


Chain B from PDB  Type:PROTEIN  Length:210
                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhh...hhhhhh.........hhhhh...hhhhhhh..eeeeee.....hhhhhhhhh......eeeeee..............eeee......hhhhhhhhhhhhhhhhhhhhhh........eeeeeeehhhhh..hhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhh......hhhhhhhh.eeeeee....eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4eq6 B   1 MEVLKNIRIYPLSNFITSTKNYINLPNELRNLISEEQESKLGFLHIIESDFKPSVALQKLVNCTTGDEKILIIDIVSIWSQQKQRQHGAIYMNSLSCINITGLIVFLELLYDSPMDALRRCQVNFNFQLRGIVIDNLSFLNNLSKFEKLFKILRKLREFLGCWIITKSFPTDFYNGIENTLVPTKLPDSYMKGMDLIIYREVGRPQYRRI 237
                                    10        20        30        40        50        60        70        80        90       100       110       120  ||   131       141||     161       171       181       191 ||    215       225 ||    237
                                                                                                                                                    123|              142|                                     193|                227|       
                                                                                                                                                     125               153                                      208                 230
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4EQ6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EQ6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EQ6)

(-) Gene Ontology  (27, 37)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
(no "Sites" information available for 4eq6)
 
  Cis Peptide Bonds
    Asp B:136 - Asn B:137   [ RasMol ]  
    Lys A:177 - Asn A:178   [ RasMol ]  
 

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  CSM2_YEAST | P40465
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  PSY3_YEAST | Q12318
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CSM2_YEAST | P40465: 3vu9 4dt1
        PSY3_YEAST | Q12318: 3vu9 4dt1

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4EQ6)