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(-) Description

Title :  CRYSTAL STRUCTURE OF LOV2 DOMAIN OF ARABIDOPSIS THALIANA PHOTOTROPIN 2
 
Authors :  K Hitomi, J. M. Christie, A. S. Arvai, K. A. Hartfield, A. J. Pratt, J. A. E. D. Getzoff
Date :  28 Mar 12  (Deposition) - 16 May 12  (Release) - 11 Jul 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Lov, Blue Light Photoreceptor, Signaling Protein, Flavoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. M. Christie, K. Hitomi, A. S. Arvai, K. A. Hartfield, M. Mettlen, A. J. Pratt, J. A. Tainer, E. D. Getzoff
Structural Tuning Of The Fluorescent Protein Ilov For Improved Photostability.
J. Biol. Chem. V. 287 22295 2012
PubMed-ID: 22573334  |  Reference-DOI: 10.1074/JBC.M111.318881

(-) Compounds

Molecule 1 - PHOTOTROPIN-2
    ChainsA
    EC Number2.7.11.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentLOV DOMAIN (UNP RESIDUES 385-496)
    GenePHOT2, CAV1, KIN7, NPL1, AT5G58140, K21L19.6
    Organism CommonMOUSE-EAR CRESS,THALE-CRESS
    Organism ScientificARABIDOPSIS THALIANA
    Organism Taxid3702
    SynonymDEFECTIVE IN CHLOROPLAST AVOIDANCE PROTEIN 1, NON- PHOTOTROPIC HYPOCOTYL 1-LIKE PROTEIN 1, ATKIN7, NPH1-LIKE PROTEIN 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1FMN1Ligand/IonFLAVIN MONONUCLEOTIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:392 , SER A:394 , ASN A:401 , ASN A:425 , CYS A:426 , ARG A:427 , LEU A:429 , GLN A:430 , VAL A:439 , ARG A:443 , ILE A:446 , LEU A:456 , ASN A:458 , ASN A:468 , PHE A:470 , PHE A:485 , GLY A:487 , GLN A:489 , HOH A:1107 , HOH A:1120 , HOH A:1126 , HOH A:1127 , HOH A:1147BINDING SITE FOR RESIDUE FMN A 1001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EEP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4EEP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EEP)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4EEP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:110
                                                                                                                                              
               SCOP domains d4eepa_ A: automated matches                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee........eeeehhhhhhhhh.hhhhhh..hhhhhh....hhhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeeeeee.....eeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 4eep A 387 IEKNFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDQATVQKIRDAIRDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHV 496
                                   396       406       416       426       436       446       456       466       476       486       496

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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EEP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EEP)

(-) Gene Ontology  (31, 31)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PHOT2_ARATH | P930252z6d 4eer 4ees 4eet 4eeu 4nxb 4nxe 4nxf 4nxg

(-) Related Entries Specified in the PDB File

4eep PRECURSOR
4eer PRECURSOR
4ees PRECURSOR
4eet PRECURSOR
4eeu PRECURSOR