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(-) Description

Title :  THE MBT REPEATS OF HUMAN SCML2 IN A COMPLEX WITH HISTONE H2A PEPTIDE
 
Authors :  N. Nady, M. F. Amaya, W. Tempel, M. Ravichandran, C. H. Arrowsmith
Date :  27 Mar 12  (Deposition) - 19 Sep 12  (Release) - 19 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.58
Chains :  Asym. Unit :  A,T
Biol. Unit 1:  A,T  (2x)
Biol. Unit 2:  A,T  (1x)
Keywords :  Mbt Fold, Royal Family, Histone Ptm Binding, Methylation, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Nady, L. Krichevsky, N. Zhong, S. Duan, W. Tempel, M. F. Amaya, M. Ravichandran, C. H. Arrowsmith
Histone Recognition By Human Malignant Brain Tumor Domains.
J. Mol. Biol. V. 423 702 2012
PubMed-ID: 22954662  |  Reference-DOI: 10.1016/J.JMB.2012.08.022

(-) Compounds

Molecule 1 - SEX COMB ON MIDLEG-LIKE PROTEIN 2
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28MHL
    Expression System Strain: C+
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 31-46
    Gene: SCML2
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 2 - HISTONE H2A.J PEPTIDE
    Chains: T
    Engineered: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: SYNTHESIZED
    Synonym: H2A/J
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AT
Biological Unit 1 (2x): AT
Biological Unit 2 (1x): AT

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1MLZ1Mod. Amino AcidN-METHYL-LYSINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1MLZ2Mod. Amino AcidN-METHYL-LYSINE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1MLZ1Mod. Amino AcidN-METHYL-LYSINE

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(-) Sequences/Alignments

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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh....hhhhh...............eeeeee..eeeeeeeeeeeeee..eeeeee........eeee.....eee.hhhhhhh...........hhhhhhhhhhhhhh.....hhhhh................eeeee.......eeeeeeeeee..eeeeee...hhhhheeee.....ee..hhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4edu A  32 DFHWEEYLKETGSISAPSECFRQSQIPPVNDFKVGMKLEARDPRNATSVCIATVIGITGARLRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKEGDLLQPPLGYQMNTSSWPMFLLETLNGSEMASATLFKKEPPKPPLNNFKVGMKLEAIDKKNPYLICPATIGDVKGDEVHITFDGWSGAFDYWCKYDSRDIFPAGWCRLTGDVLQPPGT 242
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 


Chain T from PDB  Type:PROTEIN  Length:8
                                        
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ........ Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                 4edu T  30 VHRLLRkG  37
                                  | 
                                 36-MLZ
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

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(-) Gene Ontology  (15, 17)

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 Related Entries

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UniProtKB/Swiss-Prot
        SCML2_HUMAN | Q9UQR0: 1oi1 2biv 2mem 2vyt

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