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(-) Description

Title :  TOMOGRAPHIC SUBVOLUME AVERAGE OF EFF-1 FUSOGEN ON EXTRACELLULAR VESICLES
 
Authors :  T. Zeev-Ben-Mordehai, D. Vasishtan, C. A. Siebert, K. Grunewald
Date :  13 Apr 14  (Deposition) - 04 Jun 14  (Release) - 30 Jul 14  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  22.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Cell Adhesion, Cell-Cell Fusion, Extracellular Fusion, Membrane Fusion, Pre-Fusion State (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Zeev-Ben-Mordehai, D. Vasishtan, C. A. Siebert, K. Grunewald
The Full-Length Cell-Cell Fusogen Eff-1 Is Monomeric And Upright On The Membrane.
Nat. Commun. V. 5 3912 2014
PubMed-ID: 24867324  |  Reference-DOI: 10.1038/NCOMMS4912

(-) Compounds

Molecule 1 - EFF-1A
    ChainsA
    EngineeredYES
    Expression SystemMESOCRICETUS AURATUS
    Expression System Cell LineBHK 21
    Expression System CommonGOLDEN HAMSTER
    Expression System PlasmidPCAGGS
    Expression System Taxid10036
    Expression System Vector TypePLASMID
    Organism ScientificCAENORHABDITIS ELEGANS
    Organism Taxid6239
    Other DetailsPROTEINS ON EXTRACELLULAR VESICLES
    SynonymEPITHELIAL FUSION FAILURE 1, ISOFORM A

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4CYL)

(-) Sites  (0, 0)

(no "Site" information available for 4CYL)

(-) SS Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1A:18 -A:53
2A:109 -A:165
3A:111 -A:309
4A:113 -A:155
5A:120 -A:164
6A:130 -A:142
7A:464 -A:477

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Met A:324 -Pro A:325

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CYL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4CYL)

(-) Exons   (0, 0)

(no "Exon" information available for 4CYL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:466
 aligned with G5ECA1_CAEEL | G5ECA1 from UniProtKB/TrEMBL  Length:658

    Alignment length:528
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553        
         G5ECA1_CAEEL    34 RAEPPHCSKTPIVRAQTSQNAMSSIARGMQMQFSIGLHTAVCFRLYEDTQLASQEINDDENAGNQTSLLHTIRLEKLEHHHPITQRYTFGIPEVHASCICECDATSSTCTAESHQFTACPESDKSDETSSCYRTFFPNQTPIGCSEDDIPKLCCDVRFKPYKNMTFLAVKLEQPTTYATFVYAAYDFVNGYWVEKDKTKIRSQLDGGTQDRHLDQKRRISLAVTAGGRASHQLETGMYFSRTSNGGETEELRMQPLNEITDNNFDRLGWYRMDDSGHFHVNNGVVKMDDIHKAKVKNCKEQTYKSILSANHYMPGHFNLTRPLEVIKPWIQSARIFDSSLRQAVVTHAEGTNLQISIHLDDEVESQNLVFFHNASRIRDFSGSIIVDSKSNRLFNLTVYEASGKIDGSVKMSTGFGSDTIHTFTAYVSDLHASNRSMIIPLPAIVGQGARAICLRADSMADIDKICHVIEYFESPLEIDLVEGKWHEMIGTCPTCNQINFNGMMKFLNPAHWIKGISSIGDGVMIATD 561
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............eee.........--...eeeeee....eeeeee..--------------------.eeeeeeeeeee......eeee..eeeeee..ee........hhhhhh..............eeeeeeee.............eeeeeeeeee....eeeeee.....eeeeeeeeeeee....eeeeeeeeeeee.....eeee.......eeeee............eeeeee...-.......................eee.....eee.hhhhhhhhheeeeeee....eeeeee..............hhhhhh..eeeeee.......eeeee.....eeeeee.----....eeee.......eee.eeee.....eeeeeeeeee.eeeeeeee........eeeeeeeee.....eeeeeeee.........eeeeeee........eeeeeeeee....-----------------------------------....ee.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4cyl A  12 RAEPPHCSKTPIVRAQTSQNAMSS--RGMQMQFSIGLHTAVCFRLYE--------------------LLHTIRLEKLEHHHPITQRYTFGIPEVHASCICECDATSSTCTAESHQFTACPESDKSDETSSCYRTFFPNQTPIGCSEDDIPKLCCDVRFKPYKNMTFLAVKLEQPTTYATFVYAAYDFVNGYWVEKDKTKIRSQLDGGTQDRHLDQKRRISLAVTAGGRASHQLETGMYFSRTSNG-ETEELRMQPLNEITDNNFDRLGWYRMDDSGHFHVNNGVVKMDDIHKAKVKNCKEQTYKSILSANHYMPGHFNLTRPLEVIKPWIQSARIFDSSLRQAVVTHAEGTNLQISIHL----ESQNLVFFHNASRIRDFSGSIIVDSKSNRLFNLTVYEASGKIDGSVKMSTGFGSDTIHTFTAYVSDLHASNRSMIIPLPAIVGQGARAICLRADSMADIDKICHVIEYFESPLE-----------------------------------IKGISSIGDGVMIATD 539
                                    21        31   |  | 41        51      |  -         -       |81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251    | |261       271       281       291       301       311       321       331       341       351       361        |-   |   381       391       401       411       421       431       441       451       461       471       481      |  -         -         -         -  |    531        
                                                  35 38                  58                   79                                                                                                                                                                              256 |                                                                                                             370  375                                                                                                              488                                 524               
                                                                                                                                                                                                                                                                                258                                                                                                                                                                                                                                                                                         

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CYL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CYL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CYL)

(-) Gene Ontology  (19, 19)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (G5ECA1_CAEEL | G5ECA1)
molecular function
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
biological process
    GO:0010172    embryonic body morphogenesis    The process in which the anatomical structures of the embryonic soma are generated and organized.
    GO:0040011    locomotion    Self-propelled movement of a cell or organism from one location to another.
    GO:0002009    morphogenesis of an epithelium    The process in which the anatomical structures of epithelia are generated and organized. An epithelium consists of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube.
    GO:0007275    multicellular organism development    The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
    GO:0090597    nematode male tail mating organ morphogenesis    The process in which the anatomical structures of the nematode male tail mating organ are generated and organized. The male tail is a sensory organ required for mating and, in C. elegans, consists of ray sensilla, an acellular cuticular fan, a sensory hook, and protracting, copulatory spicules.
    GO:0045138    nematode male tail tip morphogenesis    The process in which the anatomical structure of the adult male tail tip is generated and organized. In some species of rhabitid nematodes, the male tail tip undergoes a morphological change such that the most posterior hypodermal cells in the tail (hyp8-11 in C. elegans) fuse and retract anteriorly, changing the shape of the tail from a pointed, tapered cone, or spike, to a rounded, blunt dome.
    GO:0018991    oviposition    The deposition of eggs (either fertilized or not) upon a surface or into a medium such as water.
    GO:0043282    pharyngeal muscle development    The process whose specific outcome is the progression of the pharyngeal muscle over time, from its formation to the mature structure. A pharyngeal muscle is any muscle that forms part of the pharynx.
    GO:0045026    plasma membrane fusion    The joining of two or more lipid bilayer membranes that surround a cell.
    GO:0040032    post-embryonic body morphogenesis    The process in which the anatomical structures of the post-embryonic soma are generated and organized.
    GO:0000768    syncytium formation by plasma membrane fusion    The formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane, by the fusion of the plasma membranes of two or more individual cells.
    GO:0040025    vulval development    The process whose specific outcome is the progression of the egg-laying organ of female and hermaphrodite nematodes over time, from its formation to the mature structure. In nematodes, the vulva is formed from ventral epidermal cells during larval stages to give rise to a fully formed vulva in the adult.
cellular component
    GO:0044291    cell-cell contact zone    Extended zone of intimate apposition between two cells containing one or more types of intercellular junctions, e.g., the intercalated disk of muscle.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  Cis Peptide Bonds
    Met A:324 - Pro A:325   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        G5ECA1_CAEEL | G5ECA14ojc 4ojd 4oje

(-) Related Entries Specified in the PDB File

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