4CGE - JenaLib

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Title :   CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RESUSCITATION PROMOTING FACTOR E

Authors :   D. Mavrici, D. M. Prigozhin, T. Alber

Date :   23 Nov 13 (Deposition) - 05 Feb 14 (Release) - 02 Apr 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.76

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)
Biol. Unit 6: F  (1x)

Keywords :   Secreted Protein, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Mavrici, D. M. Prigozhin, T. Alber
Mycobacterium Tuberculosis Rpfe Crystal Structure Reveals A Positively Charged Catalytic Cleft.
Protein Sci. V. 23 481 2014
PubMed-ID: 24452911 | Reference-DOI: 10.1002/PRO.2431

Molecule 1 - RESUSCITATION-PROMOTING FACTOR RPFE
	Chains	:	A, B, C, D, E, F
	EC Number	:	3.-.-.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	CATALYTIC DOMAIN, RESIDUES 98-172
	Organism Scientific	:	MYCOBACTERIUM TUBERCULOSIS
	Organism Taxid	:	1773

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E
Biological Unit 6 (1x)	:						F

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 4CGE)

(no "Site" information available for 4CGE)

Asymmetric Unit

No.	Residues
1	A:107	-	A:168
2	B:107	-	B:168
3	D:107	-	D:168
4	E:107	-	E:168
5	F:107	-	F:168

Asymmetric Unit

No.	Residues
1	Ala B:141	-	Ala B:142
2	Asn E:100	-	Trp E:101
3	Gly E:139	-	Ser E:140

(no "SAP(SNP)/Variant" information available for 4CGE)

(no "PROSITE Motif" information available for 4CGE)

(no "Exon" information available for 4CGE)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:72
 aligned with RPFE_MYCTU | O53177 from UniProtKB/Swiss-Prot  Length:172

    Alignment length:72
                                   108       118       128       138       148       158       168  
           RPFE_MYCTU    99 VNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGR 170
               SCOP domains d4cgea_ A: automated matches                                             SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhh.................hhhhhhhh.........hhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                 4cge A  99 VNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGR 170
                                   108       118       128       138       148       158       168

Chain B from PDB  Type:PROTEIN  Length:74
 aligned with RPFE_MYCTU | O53177 from UniProtKB/Swiss-Prot  Length:172

    Alignment length:74
                                   108       118       128       138       148       158       168    
           RPFE_MYCTU    99 VNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG 172
               SCOP domains d4cgeb_ B: automated matches                                               SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh...........ee....ee.hhhhhh.........hhhhhhhhhhhhhhhhhhhhh.hhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------- Transcript
                 4cge B  99 VNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG 172
                                   108       118       128       138       148       158       168

Chain C from PDB  Type:PROTEIN  Length:72
 aligned with RPFE_MYCTU | O53177 from UniProtKB/Swiss-Prot  Length:172

    Alignment length:72
                                   108       118       128       138       148       158       168  
           RPFE_MYCTU    99 VNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGR 170
               SCOP domains d4cgec_ C: automated matches                                             SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhh...........ee....eehhhhhh..........hhhhhhhhhhhhhh..hhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                 4cge C  99 VNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGR 170
                                   108       118       128       138       148       158       168

Chain D from PDB  Type:PROTEIN  Length:71
 aligned with RPFE_MYCTU | O53177 from UniProtKB/Swiss-Prot  Length:172

    Alignment length:71
                                   109       119       129       139       149       159       169 
           RPFE_MYCTU   100 NWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGR 170
               SCOP domains d4cged_ D: automated matches                                            SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh..........ee....eehhhhhhh.........hhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 4cge D 100 NWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGR 170
                                   109       119       129       139       149       159       169

Chain E from PDB  Type:PROTEIN  Length:71
 aligned with RPFE_MYCTU | O53177 from UniProtKB/Swiss-Prot  Length:172

    Alignment length:71
                                   109       119       129       139       149       159       169 
           RPFE_MYCTU   100 NWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGR 170
               SCOP domains d4cgee_ E: automated matches                                            SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...........ee....eehhhhhh..........hhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 4cge E 100 NWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGR 170
                                   109       119       129       139       149       159       169

Chain F from PDB  Type:PROTEIN  Length:71
 aligned with RPFE_MYCTU | O53177 from UniProtKB/Swiss-Prot  Length:172

    Alignment length:71
                                   109       119       129       139       149       159       169 
           RPFE_MYCTU   100 NWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGR 170
               SCOP domains d4cgef_ F: automated matches                                            SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhh...........ee....eehhhhhh..........hhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 4cge F 100 NWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGR 170
                                   109       119       129       139       149       159       169

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Lysozyme-like (1361)

Superfamily: Lysozyme-like (1361)

Family: automated matches (18)

Protein domain: automated matches (18)

Mycobacterium tuberculosis [TaxId: 1773] (1)

1a	d4cgea_	A:
1b	d4cgeb_	B:
1c	d4cgec_	C:
1d	d4cged_	D:
1e	d4cgee_	E:
1f	d4cgef_	F:

(no "CATH Domain" information available for 4CGE)

(no "Pfam Domain" information available for 4CGE)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (RPFE_MYCTU | O53177)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
	GO:0010629	negative regulation of gene expression	Any process that decreases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
	GO:0010628	positive regulation of gene expression	Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
	GO:0040010	positive regulation of growth rate	Any process that increases the rate of growth of all or part of an organism.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 4cge)

	Sites
(no "Sites" information available for 4cge)

	Cis Peptide Bonds
		Ala B:141 - Ala B:142	[ RasMol ]
		Asn E:100 - Trp E:101	[ RasMol ]
		Gly E:139 - Ser E:140	[ RasMol ]

Biological Units
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