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(-) Description

Title :  PESTIVIRUS NS3 HELICASE
 
Authors :  M. A. Tortorici, S. Duquerroy, J. Kwok, C. Vonrhein, J. Perez, B. Lamp, G. Bricogne, T. Rumenapf, P. Vachette, F. A. Rey
Date :  14 Oct 13  (Deposition) - 21 Jan 15  (Release) - 15 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.27
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Hydrolase, Sf2 Helicases, Flaviviridae Ns3, Saxs (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. A. Tortorici, S. Duquerroy, J. Kwok, C. Vonrhein, J. Perez, B. Lamp, G. Bricogne, T. Rumenapf, P. Vachette, F. A. Rey
X-Ray Structure Of The Pestivirus Ns3 Helicase And Its Conformation In Solution.
J. Virol. V. 89 4356 2015
PubMed-ID: 25653438  |  Reference-DOI: 10.1128/JVI.03165-14

(-) Compounds

Molecule 1 - SERINE PROTEASE NS3
    ChainsA, B, C, D
    EC Number3.4.21.113, 3.6.1.15, 3.6.4.13
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21
    Expression System Taxid511693
    Expression System VectorPET
    Expression System Vector TypePLASMID
    FragmentHELICASE DOMAIN, 1792-2280
    MutationYES
    Organism ScientificCLASSICAL SWINE FEVER VIRUS
    Organism Taxid11096
    StrainALFORT
    SynonymNON-STRUCTURAL PROTEIN 3

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A   
Biological Unit 2 (1x) B  
Biological Unit 3 (1x)  C 
Biological Unit 4 (1x)   D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4CBM)

(-) Sites  (0, 0)

(no "Site" information available for 4CBM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4CBM)

(-) Cis Peptide Bonds  (9, 9)

Asymmetric Unit
No.Residues
1Ser A:444 -Pro A:445
2Met A:483 -Pro A:484
3Ser B:444 -Pro B:445
4Met B:483 -Pro B:484
5Ser C:444 -Pro C:445
6Met C:483 -Pro C:484
7Ser D:444 -Pro D:445
8Met D:483 -Pro D:484
9Ile C:454 -Glu C:455

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CBM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4CBM)

(-) Exons   (0, 0)

(no "Exon" information available for 4CBM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:467
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh....eeeee...hhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhh....eeee............eeeee.hhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhhhh.eeeee......eeeee.............eeee..eeee......eeee..hhhhhhhhhhhhhhh...eeeehhhhhhhhh...eeee.hhhh.........eeee..eeeeeeeee......eeeeeeeee...hhhhhhhh.......eeeee..........hhhhhhhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhh......ee.eeee..eeeeee........ee.........eeehhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cbm A 203 ATDLTEMVKKITTMNRGEFRQITLKTTELPRSVIEEIGRHKRVLVLIPLRAAAESVYQYMRQKHPSIAFNLRIGEMKEGDMATGITYASYGYFCQMSQPKLRAAMVEYSFIFLDEYHCATPEQLAIMGKIHRFSENLRVVAMTAGQKHPIEEFIAPEVMKGEDLGSEYLDIAGLKIPVEEKNNMLVFVPTRNMAVEAAKKLKAKGYNSGYYSNLRVVTSQSPYVVVATNAIESGVTLPDLDVVVDTGLKCEKRIRLSPKMPFIVTGLKRMAVTIGEQAQRRGRVGRVKPGRYYRSQETPVGSKDYHYDLLQAQRYGIEDGINITKSFREMNYDWSLYEEDSLMITQLEILNNLLISEELPMAVKNIMARTDHPEPIKLAYNSYETQVPVLFPKIRNGEVTDTYDNYTFLNARKLGDDVPPYVYATEDEDLAVELLGLDWPDPGNQGTVEAGRALKQVVGLSTAENAL 690
                                   212       222   ||  237       247       257       267       277       287       297       307       317       327       337       347   ||  366       376       386       396|      407       417       427||     443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       
                                                 226|                                                                                                                    351|                                396|                           428|                                                                                                                                                                                                                                                               
                                                  232                                                                                                                     361                                 398                            435                                                                                                                                                                                                                                                               

Chain B from PDB  Type:PROTEIN  Length:458
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh....eeeee..hhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhh....eeee............eeeee.hhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhhhh.eeeee......eeeee..........eeee..eeee......eeee..hhhhhhhhhhhhhhh...eeeehhhhhhhhh...eeee.hhhh........eeee..eeeeeeeee......eeeeeeeee...hhhhhhhh.......eeeee..........hhhhhhhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhh......ee.eeee..eeeeee........ee.........eeehhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cbm B 205 DLTEMVKKITTMNRGEFRQITLTTELPRSVIEEIGRHKRVLVLIPLRAAAESVYQYMRQKHPSIAFNLRIGEMKEGDMATGITYASYGYFCQMSQPKLRAAMVEYSFIFLDEYHCATPEQLAIMGKIHRFSENLRVVAMTAGQKHPIEEFIAPEVMKGGSEYLDIAGLKIPVEEKNNMLVFVPTRNMAVEAAKKLKAKGYNSGYYSNLRVVTSQSPYVVVATNAIESVTLPDLDVVVDTGLKCEKRIRLSPKMPFIVTGLKRMAVTIGEQAQRRGRVGRVKPGRYYRSQETPVGSKDYHYDLLQAQRYGIEDGINITKSFREMNYDWSLYEEDSLMITQLEILNNLLISEELPMAVKNIMARTDHPEPIKLAYNSYETQVPVLFPKIRNGEVTDTYDNYTFLNARKLGDDVPPYVYATEDEDLAVELLGLDWPDPGNQGTVEAGRALKQVVGLSTAEN 688
                                   214       224 ||    240       250       260       270       280       290       300       310       320       330       340       350||     369       382       392   ||  403       413       423    || 439       449      |460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680        
                                               226|                                                                                                                   351|             377|            396|                           428|                  456|                                                                                                                                                                                                                                      
                                                233                                                                                                                    361              381             398                            435                   458                                                                                                                                                                                                                                      

Chain C from PDB  Type:PROTEIN  Length:461
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh....eeeee...hhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhh....eeee............eeeee.hhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhhhh.eeeee...eeeee.............eeee..eeee.hhhhh.eeee..hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhh...eeee..............eeee..eeeeeeeee......eeeeeeeee.hhhhhhhhhh.......eeeee..........hhhhhhhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhh......ee...ee..ee............ee.........eeehhhhhhhhhh........hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cbm C 205 DLTEMVKKITTMNRGEFRQITLKTTELPRSVIEEIGRHKRVLVLIPLRAAAESVYQYMRQKHPSIAFNLRIGEMKEGDMATGITYASYGYFCQMSQPKLRAAMVEYSFIFLDEYHCATPEQLAIMGKIHRFSENLRVVAMTKHPIEEFIAPEVMKGEDLGSEYLDIAGLKIPVEEMKNNMLVFVPTRNMAVEAAKKLKAKGYNSGYYYSGEDPSNLRVVTSQSPYVVVATNAIESGVTLPDLDVVVDTGLKCEKRIRLSPKMPFIVTGLKRMAVTIGEQAQRRGRVGRVKPGRYYRSQETPVGSKDYHYDLLQAQRYGIEDGINITKSFREMNYDWSLYEEDSLMITQLEILNNLLISEELPMAVKNIMARTDHPEPIKLAYNSYETQVPVLFPKIRNGEVTDTYDNYTFLNARKLGDDVPPYVYATEDEDLAVELLGLDWPDPGNQGTVEAGRALKQVVG 682
                                   214       224 ||    239       249       259       269       279       289       299       309       319       329       339       349||     371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681 
                                               226|                                                                                                                   350|                                                                                                                                                                                                                                                                                                                               
                                                232                                                                                                                    363                                                                                                                                                                                                                                                                                                                               

Chain D from PDB  Type:PROTEIN  Length:453
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh....eeeee....hhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhh....eeee............eeeee.hhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhhhh.eeeee....eeeee.............eeee..eeee.hhhhh.eeee..hhhhhhhhhhhhhhh................eeeehhhhh.........eeee..eeeeeeeee......eeeeeeeee.hhhhhhhhhh.......eeeee.........hhhhhhhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhh......ee...ee..ee............ee.........eeehhhhhhhhhh........hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cbm D 205 DLTEMVKKITTMNRGEFRQITLGKTTELPRSVIEEIGRHKRVLVLIPLRAAAESVYQYMRQKHPSIAFNLRIGEMKEGDMATGITYASYGYFCQMSQPKLRAAMVEYSFIFLDEYHCATPEQLAIMGKIHRFSENLRVVAMTATHPIEEFIAPEVMKGEDLGSEYLDIAGLKIPVEEMKNNMLVFVPTRNMAVEAAKKLKAKGYNSYSGEDPTSQSPYVVVATNAIESGVTLPDLDVVVDTGLKCEKRIRLSPKMPFIVTGLKRMAVTIGEQAQRRGRVGRVKPGRYYRSQETPVSKDYHYDLLQAQRYGIEDGINITKSFREMNYDWSLYEEDSLMITQLEILNNLLISEELPMAVKNIMARTDHPEPIKLAYNSYETQVPVLFPKIRNGEVTDTYDNYTFLNARKLGDDVPPYVYATEDEDLAVELLGLDWPDPGNQGTVEAGRALKQVVG 682
                                   214       224 ||    238       248       258       268       278       288       298       308       318       328       338       348   ||  369       379       389       399       409       419     ||432 ||    448       458       468       478       488       498       508       518    || 529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679   
                                               226|                                                                                                                      352|                                                          425|  434|                                                                               523|                                                                                                                                                             
                                                231                                                                                                                       364                                                           429   441                                                                                525                                                                                                                                                             

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CBM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CBM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CBM)

(-) Gene Ontology  (52, 52)

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  Cis Peptide Bonds
    Ile C:454 - Glu C:455   [ RasMol ]  
    Met A:483 - Pro A:484   [ RasMol ]  
    Met B:483 - Pro B:484   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POLG_CSFVA | P197124cbg 4cbh 4cbi 4cbl 5mz4

(-) Related Entries Specified in the PDB File

4cbg PESTIVIRUS NS3 HELICASE
4cbh PESTIVIRUS NS3 HELICASE
4cbi PESTIVIRUS NS3 HELICASE
4cbl PESTIVIRUS NS3 HELICASE