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(-) Description

Title :  PESTIVIRUS NS3 HELICASE
 
Authors :  M. A. Tortorici, S. Duquerroy, J. Kwok, C. Vonrhein, J. Perez, B. Lamp, G. Bricogne, T. Rumenapf, P. Vachette, F. A. Rey
Date :  14 Oct 13  (Deposition) - 21 Jan 15  (Release) - 14 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Hydrolase, Sf2 Helicases, Pestivirus, Flaviviridae Ns3, Saxs (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Tortorici, S. Duquerroy, J. Kwok, C. Vonrhein, J. Perez, B. Lamp, G. Bricogne, T. Rumenapf, P. Vachette, F. A. Rey
X-Ray Structure Of The Pestivirus Ns3 Helicase And Its Conformation In Solution.
J. Virol. V. 89 4356 2015
PubMed-ID: 25653438  |  Reference-DOI: 10.1128/JVI.03165-14

(-) Compounds

Molecule 1 - SERINE PROTEASE NS3
    Chains: A, B, C, D
    EC Number: 3.4.21.113, 3.6.1.15, 3.6.4.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector: PET
    Expression System Vector Type: PLASMID
    Fragment: HELICASE DOMAIN, RESIDUES 1782-2280
    Organism Scientific: CLASSICAL SWINE FEVER VIRUS
    Organism Taxid: 11096
    Strain: ALFORT
    Synonym: NON-STRUCTURAL PROTEIN 3

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4CBI)

(-) Sites  (0, 0)

(no "Site" information available for 4CBI)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4CBI)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Met A:483 -Pro A:484
2Met B:483 -Pro B:484
3Ser C:444 -Pro C:445
4Met C:483 -Pro C:484
5Ser D:444 -Pro D:445
6Met D:483 -Pro D:484

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CBI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4CBI)

(-) Exons   (0, 0)

(no "Exon" information available for 4CBI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:393
                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh...eeeeee..hhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhh....eeee...........eeeeee.hhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhhh.eeeeee.ee............hhhhhhh.eeee..hhhhhhhhh.eeee.hhhhhh...eeeeeeeee......eeeeeeeee.hhhhhhhhhh............hhhhhhhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhh......ee.eeee..eeeeee........ee.........eeehhhhhhhhhh........hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cbi A 206 LTEMVKKITTMNRGEFRQITLTTELPRSVIEEIGRHKRVLVLIPLRAAAESVYQYMRQKHPSIAFNLRIGEMKEGDMATGITYASYGYFCQMSQPKLRAAMVEYSFIFLDEYHCATPEQLAIMGKIHRFSENLRVVAMTEFIAPEVMKIAGLKIPVEEMKNNMLVFVPTRNMAVEAAYVVVATNAIESGDTGLKCEKRIRLSPKMPFIVTGLKRMAVTIGEQAQRRGRVSQETPVGSKDYHYDLLQAQRYGIEDGINITKSFREMNYDWSLYEEDSLMITQLEILNNLLISEELPMAVKNIMARTDHPEPIQLAYNSYETQVPVLFPKIRNGEVTDTYDNYTFLNARKLGDDVPPYVYATEDEDLAVELLGLDWPDPGNQGTVEAGRALKQVV 681
                                   215       225||     241       251       261       271       281       291       301       311       321       331       341       368       388       398       408      |448       468       478       488       498       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678   
                                              226|                                                                                                                  350|     376|                         415|        457|                                    507|                                                                                                                                                                   
                                               233                                                                                                                   368      387                          446         468                                     518                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:419
                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh....eeeeee...hhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhh....eeee...........eeeeee.hhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhhh.eeeeee...eeeee...........hhhhhhh..eee..hhhhhhhhhhhhhhh........hhhhhhhhhhhhhhh.eee..eeeeeeeee......eeeeeeeee.hhhhhhhhhh.......eeeee..........hhhhhhhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhh......ee...ee..ee......ee.......eeehhhhhhhhhh........hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cbi B 206 LTEMVKKITTMNRGEFRQITLKTTELPRSVIEEIGRHKRVLVLIPLRAAAESVYQYMRQKHPSIAFNLRIGEMKEGDMATGITYASYGYFCQMSQPKLRAAMVEYSFIFLDEYHCATPEQLAIMGKIHRFSENLRVVAMTAHPIEEFIAPEVDIAGLKIPVEEMKNNMLVFVPTRNMAVEAAKKLKAKGYNYYSGEDPSNLRVVTNAIESGVVVDTGLKCEKRIRLSPKMPFIVTGLKRMAVTIGEQAQRRGRVGRVKPGRYYRSQETPVGSKDYHYDLLQAQRYGIEDGINITKSFREMNYDWSLYEEDSLMITQLEILNNLLISEELPMAVKNIMAHPEPIQLAYNSYETQVPVLFPKIRNGEVTDTYNARKLGVPPYVYATEDEDLAVELLGLDWPDPGNQGTVEAGRALKQVVGL 683
                                   215       225||     240       250       260       270       280       290       300       310       320       330       340       350||     372 ||    393       403       413       423||     436    || 456||     473       483       493       503       513       523       533       543       553       563       573       583       596       606       616       626|    ||644       654       664       674         
                                              226|                                                                                                                    351|       374|                                   424|          441|  457|                                                                                                                           591|                            626|  638|                                          
                                               232                                                                                                                     364        386                                    428           452   465                                                                                                                            595                             633   641                                          


Chain C from PDB  Type:PROTEIN  Length:453
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh.....eeeee....hhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhh....eeee...........eeeeee.hhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhhhh.eeeee.....eeeee....ee..ee.hhhhhhh.eeee..hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhh...eeee.hhhhhhh......eeee..eeeeeeeee......eeeeeeeee.hhhhhhhhhh.......eeeee......hhhhhhhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhh......ee.eee....eeeee........ee.........eeehhhhhhhhhh........hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cbi C 205 DLTEMVKKITTMNRGEFRQITLGKTTELPRSVIEEIGRHKRVLVLIPLRAAAESVYQYMRQKHPSIAFNLRIGEMKEGDMATGITYASYGYFCQMSQPKLRAAMVEYSFIFLDEYHCATPEQLAIMGKIHRFSENLRVVAMTATPHPIEEFIAPELDIAGLKIPVEEMKNNMLVFVPTRNMAVEAAKKLKAKGYNSGYYYSGEDPSNLRVVTSQSPYVVVATNAIESGVTLPDLDVVVDTGLKCEKRIRLSPKMPFIVTGLKRMAVTIGEQAQRRGRVGRVKPGRYYRSQESKDYHYDLLQAQRYGIEDGINITKSFREMNYDWSLYEEDSLMITQLEILNNLLISEELPMAVKNIMARTDHPEPIQLAYNSYETQVPVLFPKIRNGEVTDTYDNYTFLNARKLGDDVPPYVYATEDEDLAVELLGLDWPDPGNQGTVEAGRALKQVVGLSTA 686
                                   214       224 ||    238       248       258       268       278       288       298       308       318       328       338       348    || 368    || 389       399       409       419       429       439       449       459       469       479       489       499       509       519||     533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683   
                                               226|                                                                                                                       353|      373|                                                                                                                                    520|                                                                                                                                                                 
                                                231                                                                                                                        364       385                                                                                                                                     525                                                                                                                                                                 


Chain D from PDB  Type:PROTEIN  Length:456
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhh....eeeeee....hhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhh....eeee...........eeeeee.hhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhhh.eeeeee.....eeeee........eeee..eeee.hhhhh.eeee..hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhh...eeee.hhhhhhh......eeee..eeeeeeeee......eeeeeeeee.hhhhhhhhhh........eee.......hhhhhhhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhh......ee.eeee..eeeeee........ee.........eeehhhhhhhhhh........hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4cbi D 206 LTEMVKKITTMNRGEFRQITLGKTTELPRSVIEEIGRHKRVLVLIPLRAAAESVYQYMRQKHPSIAFNLRIGEMKEGDMATGITYASYGYFCQMSQPKLRAAMVEYSFIFLDEYHCATPEQLAIMGKIHRFSENLRVVAMTATPHPIEEFIAPEVLGSEYLDIAGLKIPVEEMKNNMLVFVPTRNMAVEAAKKLKAKGYNSGYYYSGEDPSNLRVVTSQSPYVVVATNAIESGVTLPDLDVVVDTGLKCEKRIRLSPKMPFIVTGLKRMAVTIGEQAQRRGRVGRVKPRYYRSQETPKDYHYDLLQAQRYGIEDGINITKSFREMNYDWSLYEEDSLMITQLEILNNLLISEELPMAVKNIMARTDHPEPIQLAYNSYETQVPVLFPKIRNGEVTDTYDNYTFLNARKLGDDVPPYVYATEDEDLAVELLGLDWPDPGNQGTVEAGRALKQVVGLS 684
                                   215       225||     239       249       259       269       279       289       299       309       319       329       339       349   ||  369    || 384       394       404       414       424       434       444       454       464       474       484       494       504       515      |528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678      
                                              226|                                                                                                                       353|       374|                                                                                                                                 512|     522|                                                                                                                                                              
                                               231                                                                                                                        364        380                                                                                                                                  514      526
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CBI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CBI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CBI)

(-) Gene Ontology  (52, 52)

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 Related Entries

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        POLG_CSFVA | P19712: 4cbg 4cbh 4cbl 4cbm 5mz4

(-) Related Entries Specified in the PDB File

4cbg PESTIVIRUS NS3 HELICASE
4cbh PESTIVIRUS NS3 HELICASE