4BNR - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   EXTREMELY STABLE COMPLEX OF CRAYFISH TRYPSIN WITH BOVINE TRYPSIN INHIBITOR

Authors :   T. Molnar, J. Voros, B. Szeder, K. Takats, J. Kardos, G. Katona, L. Graf

Date :   17 May 13 (Deposition) - 04 Sep 13 (Release) - 13 Nov 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,I,J
Biol. Unit 1: B,J  (1x)
Biol. Unit 2: A,I  (1x)

Keywords :   Hydolase-Inhibitor Complex, Protease, Inhibition, Arthropoda, Heat Stability, Complex Formation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Molnar, J. Voros, B. Szeder, K. Takats, J. Kardos, G. Katona, L. Graf
Comparison Of Complexes Formed By A Crustacean And A Vertebrate Trypsin With Bovine Pancreatic Trypsin Inhibitor - The Key To Achieving Extreme Stability?
Febs J. V. 280 5750 2013
PubMed-ID: 24034223 | Reference-DOI: 10.1111/FEBS.12491

Molecule 1 - HEPATOPANCREAS TRYPSIN
	Chains	:	A, B
	EC Number	:	3.4.21.4
	Organ	:	STOMACH
	Organism Common	:	NARROW-FINGERED CRAYFISH
	Organism Scientific	:	PONTASTACUS LEPTODACTYLUS
	Organism Taxid	:	6717

Molecule 2 - PANCREATIC TRYPSIN INHIBITOR
	Chains	:	I, J
	Organ	:	PANCREAS
	Organism Common	:	CATTLE
	Organism Scientific	:	BOS TAURUS
	Organism Taxid	:	9913
	Synonym	:	BOVINE PANCREATIC TRYPSIN INHIBITOR, APROTININ, BASIC PROTEASE INHIBITOR, BPI, BPTI

		1	2	3	4
Asymmetric Unit	:	A	B	I	J
Biological Unit 1 (1x)	:		B		J
Biological Unit 2 (1x)	:	A		I

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 6)

No.	Name	Count	Type	Full Name
1	CA	4	Ligand/Ion	CALCIUM ION
2	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	SO4	1	Ligand/Ion	SULFATE ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:70 , ASP A:72 , VAL A:75 , GLU A:77 , GLU A:80 , HOH A:2088	BINDING SITE FOR RESIDUE CA A 600
2	AC2	SOFTWARE	ASP A:165 , ASP A:178 , MET A:180 , GLU A:231 , HOH A:2175 , HOH A:2176	BINDING SITE FOR RESIDUE CA A 601
3	AC3	SOFTWARE	GLU B:70 , ASP B:72 , VAL B:75 , GLU B:77 , GLU B:80 , HOH B:2059	BINDING SITE FOR RESIDUE CA B 600
4	AC4	SOFTWARE	ASP B:165 , ASP B:178 , MET B:180 , GLU B:231	BINDING SITE FOR RESIDUE CA B 601
5	AC5	SOFTWARE	PHE I:4 , ARG I:42 , HOH I:2005 , HOH I:2053 , HOH I:2065 , HOH I:2066 , HOH I:2067	BINDING SITE FOR RESIDUE SO4 I 701
6	AC6	SOFTWARE	HOH A:2116 , GLU J:7 , LYS J:41 , ARG J:42 , HOH J:2008	BINDING SITE FOR RESIDUE SO4 J 701

Asymmetric Unit

No.	Residues
1	A:42	-	A:58
2	A:168	-	A:182
3	A:191	-	A:219
4	B:42	-	B:58
5	B:168	-	B:182
6	B:191	-	B:219
7	I:5	-	I:55
8	I:14	-	I:38
9	I:30	-	I:51
10	J:5	-	J:55
11	J:14	-	J:38
12	J:30	-	J:51

(no "Cis Peptide Bond" information available for 4BNR)

(no "SAP(SNP)/Variant" information available for 4BNR)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BPTI_KUNITZ_2	PS50279	Pancreatic trypsin inhibitor (Kunitz) family profile.	BPT1_BOVIN	40-90	2	I:5-55 J:5-55
2	BPTI_KUNITZ_1	PS00280	Pancreatic trypsin inhibitor (Kunitz) family signature.	BPT1_BOVIN	68-86	2	I:33-51 J:33-51

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BPTI_KUNITZ_2	PS50279	Pancreatic trypsin inhibitor (Kunitz) family profile.	BPT1_BOVIN	40-90	1	- J:5-55
2	BPTI_KUNITZ_1	PS00280	Pancreatic trypsin inhibitor (Kunitz) family signature.	BPT1_BOVIN	68-86	1	- J:33-51

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BPTI_KUNITZ_2	PS50279	Pancreatic trypsin inhibitor (Kunitz) family profile.	BPT1_BOVIN	40-90	1	I:5-55 -
2	BPTI_KUNITZ_1	PS00280	Pancreatic trypsin inhibitor (Kunitz) family signature.	BPT1_BOVIN	68-86	1	I:33-51 -

(no "Exon" information available for 4BNR)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:237
 aligned with Q52V24_ASTLP | Q52V24 from UniProtKB/TrEMBL  Length:237

    Alignment length:237
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       
        Q52V24_ASTLP      1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCAYGDDYENPSGLQIVAGELDMSVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGHTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYGADEILDSMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKANAV  237
               SCOP domains d4bnra_ A: Trypsin(ogen)                                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee........eeeeeeee..eeeeeeeeeeee..eeee...............eeeee............eeeeeeeeee.............eeeee........................eeeeee..............eeeeeeeehhhhhhhhhh.......eeee................eeee......eeeeeeee..........eeeee...hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4bnr A   16 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQIVAGELDMSVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGHTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYGADEILDSMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKANAV  244
                                    25        35  |||   42        52       60B||||    66        76        86        96       106       116       126    || 138       148||     159       169    |  178      186B       196       206       216       227       237       
                                                37A||                     60A|||||                                                                    131|            149|                   173A          186A|                                    225|                 
                                                 37B|                      60B||||                                                                     134             151                                  186B                                     227                 
                                                  37C                       60C|||                                                                                                                                                                                       
                                                                             60D||                                                                                                                                                                                       
                                                                              60E|                                                                                                                                                                                       
                                                                               60F

Chain B from PDB  Type:PROTEIN  Length:237
 aligned with Q52V24_ASTLP | Q52V24 from UniProtKB/TrEMBL  Length:237

    Alignment length:237
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       
        Q52V24_ASTLP      1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCAYGDDYENPSGLQIVAGELDMSVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGHTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYGADEILDSMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKANAV  237
               SCOP domains d4bnrb_ B: Trypsin(ogen)                                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee........eeeeeeee..eeeeeeeeeeee..eeee...............eeeee............eeeeeeeeee.............eeeee........................eeeeee..............eeeeeeeehhhhhhhhhh.......eeee................eeee......eeeeeeee..........eeeee...hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4bnr B   16 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQIVAGELDMSVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGHTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYGADEILDSMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKANAV  244
                                    25        35  |||   42        52       60B||||    66        76        86        96       106       116       126    || 138       148||     159       169    |  178      186B       196       206       216       227       237       
                                                37A||                     60A|||||                                                                    131|            149|                   173A          186A|                                    225|                 
                                                 37B|                      60B||||                                                                     134             151                                  186B                                     227                 
                                                  37C                       60C|||                                                                                                                                                                                       
                                                                             60D||                                                                                                                                                                                       
                                                                              60E|                                                                                                                                                                                       
                                                                               60F

Chain I from PDB  Type:PROTEIN  Length:59
 aligned with BPT1_BOVIN | P00974 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:59
                                    45        55        65        75        85         
          BPT1_BOVIN     36 RPDFCLEPPYTGPCKARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCMRTCGGAI   94
               SCOP domains d4bnri_ I: automated matches                                SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh..........eeeeeee....eeeeeee...........hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----BPTI_KUNITZ_2  PDB: I:5-55 UniProt: 40-90          ---- PROSITE (1)
                PROSITE (2) --------------------------------BPTI_KUNITZ_1      -------- PROSITE (2)
                 Transcript ----------------------------------------------------------- Transcript
                4bnr I    1 RPDFCLEPPYTGPCKARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCMRTCGGAI   59
                                    10        20        30        40        50

Chain J from PDB  Type:PROTEIN  Length:59
 aligned with BPT1_BOVIN | P00974 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:59
                                    45        55        65        75        85         
          BPT1_BOVIN     36 RPDFCLEPPYTGPCKARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCMRTCGGAI   94
               SCOP domains d4bnrj_ J: automated matches                                SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh..........eeeeeee....eeeeeee...........hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----BPTI_KUNITZ_2  PDB: J:5-55 UniProt: 40-90          ---- PROSITE (1)
                PROSITE (2) --------------------------------BPTI_KUNITZ_1      -------- PROSITE (2)
                 Transcript ----------------------------------------------------------- Transcript
                4bnr J    1 RPDFCLEPPYTGPCKARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCMRTCGGAI   59
                                    10        20        30        40        50

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Trypsin-like serine proteases (1752)

Superfamily: Trypsin-like serine proteases (1752)

Family: Eukaryotic proteases (1343)

Protein domain: Trypsin(ogen) (500)

Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717] (2)

1a	d4bnra_	A:
1b	d4bnrb_	B:

Class: Small proteins (3458)

Fold: BPTI-like (161)

Superfamily: BPTI-like (161)

Family: automated matches (24)

Protein domain: automated matches (24)

Cow (Bos taurus) [TaxId: 9913] (5)

2a	d4bnri_	I:
2b	d4bnrj_	J:

(no "CATH Domain" information available for 4BNR)

(no "Pfam Domain" information available for 4BNR)

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q52V24_ASTLP | Q52V24)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004252	serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0008236	serine-type peptidase activity	Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.

Chain I,J (BPT1_BOVIN | P00974)

molecular function
	GO:0030414	peptidase inhibitor activity	Stops, prevents or reduces the activity of a peptidase, any enzyme that catalyzes the hydrolysis peptide bonds.
	GO:0019870	potassium channel inhibitor activity	Stops, prevents, or reduces the activity of a potassium channel.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004867	serine-type endopeptidase inhibitor activity	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme.
biological process
	GO:0010951	negative regulation of endopeptidase activity	Any process that decreases the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins.
	GO:0010466	negative regulation of peptidase activity	Any process that stops or reduces the rate of peptidase activity, the hydrolysis of peptide bonds within proteins.
	GO:0090331	negative regulation of platelet aggregation	Any process that decreases the rate, frequency or extent of platelet aggregation. Platelet aggregation is the adhesion of one platelet to one or more other platelets via adhesion molecules.
	GO:0070495	negative regulation of thrombin-activated receptor signaling pathway	Any process that stops, prevents, or reduces the frequency, rate or extent of thrombin-activated receptor protein signaling pathway activity. A thrombin receptor signaling pathway is the series of molecular signals generated as a consequence of a thrombin-activated receptor binding to one of its physiological ligands.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Asymmetric Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4bnr)

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(no "Related Entries Specified in the PDB File" available for 4BNR)

Description

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SS Bonds (12, 12)

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