4UOE - JenaLib

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Title :   CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM SPERMIDINE SYNTHASE IN COMPLEX WITH 5'-DEOXY-5'-METHYLIOADENOSINE AND 4-AMINOMETHYLANILINE

Authors :   J. Sprenger, J. C. Halander, B. Svensson, S. Al-Karadaghi, L. Person

Date :   03 Jun 14 (Deposition) - 08 Oct 14 (Release) - 25 Mar 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.05

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (2x)
Biol. Unit 2: B,C  (1x)

Keywords :   Transferase, Aminopropyl Transferase, Polyamine Pathway, Rossmann- Like Fold (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Sprenger, B. Svensson, J. Halander, J. Carey, L. Persson, S. Al-Karadaghi
Three-Dimensional Structures Of Plasmodium Falciparum Spermidine Synthase With Bound Inhibitors Suggest New Strategies For Drug Design.
Acta Crystallogr. , Sect. D V. 71 484 2015
PubMed-ID: 25760598 | Reference-DOI: 10.1107/S1399004714027011

Molecule 1 - SPERMIDINE SYNTHASE
	Chains	:	A, B, C
	EC Number	:	2.5.1.16
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	P15-TEV-LIC
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 41-321
	Organism Scientific	:	PLASMODIUM FALCIPARUM
	Organism Taxid	:	36329
	Strain	:	3D7

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (2x)	:	A
Biological Unit 2 (1x)	:		B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 9)

No.	Name	Count	Type	Full Name
1	1PG	1	Ligand/Ion	2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL
2	4ZY	3	Ligand/Ion	4-(AMINOMETHYL)ANILINE
3	GOL	2	Ligand/Ion	GLYCEROL
4	MTA	3	Ligand/Ion	5'-DEOXY-5'-METHYLTHIOADENOSINE

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	1PG	-1	Ligand/Ion	2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL
2	4ZY	2	Ligand/Ion	4-(AMINOMETHYL)ANILINE
3	GOL	-1	Ligand/Ion	GLYCEROL
4	MTA	2	Ligand/Ion	5'-DEOXY-5'-METHYLTHIOADENOSINE

Biological Unit 2 (4, 7)

No.	Name	Count	Type	Full Name
1	1PG	1	Ligand/Ion	2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL
2	4ZY	2	Ligand/Ion	4-(AMINOMETHYL)ANILINE
3	GOL	2	Ligand/Ion	GLYCEROL
4	MTA	2	Ligand/Ion	5'-DEOXY-5'-METHYLTHIOADENOSINE

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLN A:72 , GLN A:93 , GLY A:124 , GLY A:125 , ASP A:127 , CYS A:146 , GLU A:147 , ILE A:148 , VAL A:152 , ASP A:178 , ALA A:179 , ASP A:196 , SER A:197 , SER A:198 , PRO A:203 , ALA A:204 , THR A:206 , LEU A:207	BINDING SITE FOR RESIDUE MTA A 401
2	AC2	SOFTWARE	GLN A:93 , TYR A:102 , ASP A:196 , SER A:197 , ASP A:199 , GLN A:229 , TYR A:264 , HOH A:2008 , HOH A:2030 , HOH A:2070	BINDING SITE FOR RESIDUE 4ZY A 501
3	AC3	SOFTWARE	TRP B:234 , PHE B:313 , HOH B:2144 , LYS C:97 , LYS C:297	BINDING SITE FOR RESIDUE GOL B 503
4	AC4	SOFTWARE	GLN B:72 , GLY B:124 , GLY B:125 , ASP B:127 , CYS B:146 , GLU B:147 , ILE B:148 , VAL B:152 , ASP B:178 , ALA B:179 , ASP B:196 , SER B:197 , SER B:198 , PRO B:203 , ALA B:204 , THR B:206 , LEU B:207 , 4ZY B:501	BINDING SITE FOR RESIDUE MTA B 401
5	AC5	SOFTWARE	ILE B:92 , GLN B:93 , TYR B:102 , ASP B:196 , SER B:197 , ASP B:199 , GLN B:229 , TYR B:264 , MTA B:401 , HOH B:2008 , HOH B:2032 , HOH B:2096	BINDING SITE FOR RESIDUE 4ZY B 501
6	AC6	SOFTWARE	TRP B:43 , SER B:45 , PHE B:47 , SER B:57 , SER C:45 , PHE C:47	BINDING SITE FOR RESIDUE 1PG B 702
7	AC7	SOFTWARE	GLN C:72 , LEU C:88 , GLN C:93 , GLY C:124 , GLY C:125 , ASP C:127 , CYS C:146 , GLU C:147 , ILE C:148 , VAL C:152 , ASP C:178 , ALA C:179 , ASP C:196 , SER C:197 , SER C:198 , PRO C:203 , ALA C:204 , THR C:206 , LEU C:207 , 4ZY C:501	BINDING SITE FOR RESIDUE MTA C 401
8	AC8	SOFTWARE	VAL C:91 , ILE C:92 , GLN C:93 , TYR C:102 , ASP C:196 , SER C:197 , ASP C:199 , TYR C:264 , MTA C:401 , HOH C:2008 , HOH C:2037 , HOH C:2094	BINDING SITE FOR RESIDUE 4ZY C 501
9	AC9	SOFTWARE	LYS B:97 , PHE B:100 , LYS B:297 , HOH B:2037 , TRP C:234 , HOH C:2114	BINDING SITE FOR RESIDUE GOL C 502

(no "SS Bond" information available for 4UOE)

(no "Cis Peptide Bond" information available for 4UOE)

(no "SAP(SNP)/Variant" information available for 4UOE)

(no "PROSITE Motif" information available for 4UOE)

(no "Exon" information available for 4UOE)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.........eeeeeeeeeeeee....eeeeeee....eeeee..eeeee..hhhhhhhhhhhhhhhhh....eeeeee...hhhhhhhh......eeeeee.hhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhh...eeeeeee.....hhhhhhhhhhhhhhhhhheeeeeeeeee......hhhhhhhhhhhhhh...eeeeeeee...hhh.eeeeeeee..............hhhhh.....hhhhhhhh...hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uoe A  41 KKWFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILCCSKTDTGLTKPNKKLESKEFADLKYYNYENHSAAFKLPAFLLKEIENI 321
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320

Chain B from PDB  Type:PROTEIN  Length:279
                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.......eeeeeeeeeeeeeee....eeeeeee....eeeee..eeeee..hhhhhhhhhhhhhhh......eeeeee...hhhhhhhh......eeeeee.hhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhh......eeeeeee.....hhhhhhhhhhhhhhhhhheeeeeeeeee......hhhhhhhhhhhhhh...eeeeeeee...hhh.eeeeeeee..............hhhhh.....hhhhhhhh...hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uoe B  41 KKWFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILCCSKTDTGLTKPNKKLESKEFADLKYYNYENHSAAFKLPAFLLKEIE 319
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310

Chain C from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.......eeeeeeeeeeeeeee....eeeeeee....eeeee..eeeee..hhhhhhhhhhhhhhhhh....eeeeee...hhhhhhhhh.....eeeeee.hhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhh......eeeeeee.....hhhhhhhhhhhhhhhhhheeeeeeeeee......hhhhhhhhhhhhhh...eeeeeeee...hhh.eeeeeeee..............hhhhh.....hhhhhhhh...hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uoe C  41 KKWFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILCCSKTDTGLTKPNKKLESKEFADLKYYNYENHSAAFKLPAFLLKEIENI 321
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4UOE)

(no "CATH Domain" information available for 4UOE)

(no "Pfam Domain" information available for 4UOE)

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Description

Compounds

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Chains, Units

Ligands, Modified Residues, Ions (4, 9)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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Exons (0, 0)

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Gene Ontology (6, 6)

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