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(-) Description

Title :  FAB FRAGMENT OF ANTIPORPHRIN ANTIBODY 13G10
 
Authors :  J. P. Mahy, B. Golinelli-Pimpaneau
Date :  12 Mar 12  (Deposition) - 31 Oct 12  (Release) - 04 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  H,L
Keywords :  Immune System, 13G10, Metalloporphyrin, Catalytic Antibody, Peroxidase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Munoz Robles, J. Marechal, A. Bahloul, M. Sari, J. Mahy, B. Golinelli-Pimpaneau
Crystal Structure Of Two Anti-Porphyrin Antibodies With Peroxidase Activity.
Plos One V. 7 51128 2012
PubMed-ID: 23240001  |  Reference-DOI: 10.1371/JOURNAL.PONE.0051128
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FAB13G10, HEAVY CHAIN
    Cell Line: MURINE HYBRIDOMA
    Chains: H
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 2 - FAB13G10, LIGHT CHAIN
    Cell Line: MURINE HYBRIDOMA
    Chains: L
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : HL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2MG1Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN H:33 , GLY H:99 , GLY H:100 , GLY H:102 , HOH H:2091BINDING SITE FOR RESIDUE GOL H1219
2AC2SOFTWAREGLU L:16 , THR L:53 , ASN L:54 , GLY L:66 , SER L:67 , LEU L:68 , HOH L:2006 , HOH L:2044BINDING SITE FOR RESIDUE GOL L1212
3AC3SOFTWARESER H:59 , ASN L:96BINDING SITE FOR RESIDUE GOL L1213
4AC4SOFTWAREHOH H:2091BINDING SITE FOR RESIDUE MG L1214

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1H:22 -H:96
2H:145 -H:200
3L:22 -L:90
4L:137 -L:196

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Phe H:151 -Pro H:152
2Glu H:153 -Pro H:154
3Trp H:193 -Pro H:194
4Tyr L:143 -Pro L:144

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4AMK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4AMK)

(-) Exons   (0, 0)

(no "Exon" information available for 4AMK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain H from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee.....eeeeee....hhhhheeeeeeee...eeeeeeee......eee.......eeeeee....eeeeee...hhhhheeeeeeee......ee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...ee....eeeeeeeeee.........eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4amk H   3 QLQQPGAELVKPGASVKMSCKASGYTFTSYNMHWVKQTPGQGLEWIGVIYPGNGDTSYSQKFKGKATLTADKSSSTAYMQLSSLTSEDSAVYYCSRGGAGIMAYWGQGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR 218
                                    12        22        32        42        52        62        72        82        92       102  ||   113       123       133       143       153       163       173       183       193       203       213     
                                                                                                                                105|                                                                                                               
                                                                                                                                 107                                                                                                               


Chain L from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains d4amkl1 L:2-110 automated matches                                                                            d4amkl2 L:111-212 automated matches                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee..eeee.....eeeeee............eeeeee...eeeeeee...ee.......eeeeee..eeeeee...hhhhheeeeeeeee..eeee...eeeee........eeeee..hhhhhh..eeeeeeeeeee.....eeeeee..eee...eee...ee.....eeeeeeeeeehhhhhh..eeeeeeee..eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4amk L   2 AVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALWYSNHLVFGGGTKLTVLGQPKSSPSVTLFPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHTVEKSLSRA 212
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4AMK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4AMK)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4AMK)

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    Tyr L:143 - Pro L:144   [ RasMol ]  
 

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