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(-) Description

Title :  FIVE MINUTES IRON LOADED HUMAN H FERRITIN
 
Authors :  C. Pozzi, F. Di Pisa, S. Mangani
Date :  29 Apr 15  (Deposition) - 09 Sep 15  (Release) - 16 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.56
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (24x)
Keywords :  Oxidoreductase, Iron Storage Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. Pozzi, F. Di Pisa, C. Bernacchioni, S. Ciambellotti, P. Turano, S. Mangani
Iron Binding To Human Heavy-Chain Ferritin.
Acta Crystallogr. , Sect. D V. 71 1909 2015
PubMed-ID: 26327381  |  Reference-DOI: 10.1107/S1399004715013073

(-) Compounds

Molecule 1 - FERRITIN HEAVY CHAIN
    ChainsA
    EC Number1.16.3.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET-9A
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 2-183
    GeneFTH1, FTH, FTHL6, OK/SW-CL.84, PIG15
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymFERRITIN H SUBUNIT,CELL PROLIFERATION-INDUCING GENE 15 PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (24x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 24)

Asymmetric Unit (3, 24)
No.NameCountTypeFull Name
1CL14Ligand/IonCHLORIDE ION
2FE25Ligand/IonFE (II) ION
3MG5Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 120)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2FE2120Ligand/IonFE (II) ION
3MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:27 , GLU A:62 , HIS A:65 , FE2 A:202 , HOH A:304 , HOH A:326 , HOH A:487binding site for residue FE2 A 201
02AC2SOFTWAREGLU A:62 , GLU A:107 , GLN A:141 , FE2 A:201 , HOH A:304 , HOH A:453 , HOH A:487binding site for residue FE2 A 202
03AC3SOFTWAREGLN A:58 , GLU A:61 , HOH A:445 , HOH A:466 , HOH A:475 , HOH A:489binding site for residue FE2 A 203
04AC4SOFTWAREHIS A:57 , GLU A:61 , HOH A:442 , HOH A:473 , HOH A:486 , HOH A:509binding site for residue FE2 A 204
05AC5SOFTWAREHIS A:173 , CL A:211 , HOH A:503binding site for residue FE2 A 205
06AC6SOFTWAREHOH A:313 , HOH A:329 , HOH A:564 , HOH A:603binding site for residue MG A 206
07AC7SOFTWAREHOH A:332 , HOH A:420 , HOH A:459 , HOH A:481 , HOH A:565 , HOH A:615binding site for residue MG A 207
08AC8SOFTWAREHOH A:363 , HOH A:396 , HOH A:570 , HOH A:577 , HOH A:627 , HOH A:629binding site for residue MG A 208
09AC9SOFTWAREASP A:131 , HOH A:310 , HOH A:327binding site for residue MG A 209
10AD1SOFTWAREHOH A:356 , HOH A:542binding site for residue MG A 210
11AD2SOFTWAREHIS A:173 , FE2 A:205binding site for residue CL A 211
12AD3SOFTWAREGLN A:14 , HOH A:606binding site for residue CL A 212
13AD4SOFTWAREGLN A:75 , HOH A:387 , HOH A:469 , HOH A:507binding site for residue CL A 213
14AD5SOFTWAREARG A:9 , ASN A:11 , TYR A:12 , HOH A:532binding site for residue CL A 214
15AD6SOFTWAREASN A:25 , HOH A:545 , HOH A:611binding site for residue CL A 215
16AD7SOFTWAREGLU A:134 , THR A:135 , HIS A:136 , TYR A:137 , ASN A:139 , GLU A:140binding site for residue CL A 216
17AD8SOFTWAREASP A:150 , HIS A:151 , ASN A:154 , HOH A:303 , HOH A:590binding site for residue CL A 217
18AD9SOFTWAREGLN A:83 , ASP A:84 , LYS A:86 , CL A:222 , HOH A:564binding site for residue CL A 218
19AE1SOFTWAREASN A:125 , HOH A:426 , HOH A:588binding site for residue CL A 219
20AE2SOFTWAREGLN A:75 , ASN A:139 , HOH A:330binding site for residue CL A 220
21AE3SOFTWAREASN A:11 , HOH A:612binding site for residue CL A 221
22AE4SOFTWARELYS A:86 , CL A:218 , HOH A:370binding site for residue CL A 222
23AE5SOFTWARELYS A:124binding site for residue CL A 223
24AE6SOFTWAREASN A:21 , HOH A:505 , HOH A:541binding site for residue CL A 224

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZJK)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:160 -Pro A:161

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZJK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZJK)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZJK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zjk A   5 TSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKPDCDDWESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLG 176
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZJK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZJK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZJK)

(-) Gene Ontology  (17, 17)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FRIH_HUMAN | P027941fha 2cei 2chi 2cih 2clu 2cn6 2cn7 2fha 2iu2 2z6m 3ajo 3ajp 3ajq 3erz 3es3 4dyx 4dyy 4dyz 4dz0 4oyn 4y08 4ykh 5cmq 5cmr 5gn8 5gou 5jkk 5jkl 5jkm 5up7 5up8 5vtd

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4ZJK)