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(-) Description

Title :  STRUCTURE OF CALCIUM-BOUND REGULATORY DOMAIN OF THE HUMAN ATP-MG/PI CARRIER IN THE P2 FORM
 
Authors :  S. P. D. Harborne, J. J. Ruprecht, E. R. S. Kunji
Date :  16 Apr 15  (Deposition) - 22 Jul 15  (Release) - 29 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Ef-Hand, Atp-Mg/Pi, Carrier, Calcium, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. P. Harborne, J. J. Ruprecht, E. R. Kunji
Calcium-Induced Conformational Changes In The Regulatory Domain Of The Human Mitochondrial Atp-Mg/Pi Carrier.
Biochim. Biophys. Acta V. 1847 1245 2015
PubMed-ID: 26164100  |  Reference-DOI: 10.1016/J.BBABIO.2015.07.002

(-) Compounds

Molecule 1 - CALCIUM-BINDING MITOCHONDRIAL CARRIER PROTEIN SCAMC-1
    ChainsA, B, C
    EngineeredYES
    Expression SystemLACTOCOCCUS LACTIS
    Expression System PlasmidPNZ8048
    Expression System StrainNZ9000
    Expression System Taxid1358
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 14-174
    GeneSLC25A24, APC1, MCSC1, SCAMC1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMITOCHONDRIAL ATP-MG/PI CARRIER PROTEIN 1,MITOCHONDRIAL CA(2+)-DEPENDENT SOLUTE CARRIER PROTEIN 1,SMALL CALCIUM-BINDING MITOCHONDRIAL CARRIER PROTEIN 1,SOLUTE CARRIER FAMILY 25 MEMBER 24

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit ABC
Biological Unit 1 (1x)A  
Biological Unit 2 (1x) B 
Biological Unit 3 (1x)  C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 25)

Asymmetric Unit (3, 25)
No.NameCountTypeFull Name
1CA12Ligand/IonCALCIUM ION
2GOL5Ligand/IonGLYCEROL
3SO48Ligand/IonSULFATE ION
Biological Unit 1 (2, 5)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2GOL2Ligand/IonGLYCEROL
3SO43Ligand/IonSULFATE ION
Biological Unit 2 (2, 5)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2GOL2Ligand/IonGLYCEROL
3SO43Ligand/IonSULFATE ION
Biological Unit 3 (2, 3)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2GOL1Ligand/IonGLYCEROL
3SO42Ligand/IonSULFATE ION

(-) Sites  (25, 25)

Asymmetric Unit (25, 25)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:32 , ASN A:34 , ASP A:36 , VAL A:38 , GLU A:43 , HOH A:1119binding site for residue CA A 1001
02AC2SOFTWAREASP A:68 , ASN A:70 , ASP A:72 , LYS A:74 , GLU A:79 , HOH A:1112binding site for residue CA A 1002
03AC3SOFTWAREASP A:99 , ASN A:101 , ASP A:103 , LYS A:105 , GLU A:107 , GLU A:110binding site for residue CA A 1003
04AC4SOFTWARELYS A:105 , ASP A:135 , THR A:139 , THR A:141binding site for residue CA A 1004
05AC5SOFTWAREGLY A:56 , GLN A:57 , GOL A:1008binding site for residue SO4 A 1005
06AC6SOFTWARETHR A:22 , ARG A:23 , TYR A:24 , GLU A:25 , MET A:81binding site for residue SO4 A 1006
07AC7SOFTWAREGLU A:107 , ALA A:108 , SER A:109 , GLU A:124binding site for residue SO4 A 1007
08AC8SOFTWAREGLY A:56 , GLN A:57 , ASP A:58 , ALA A:59 , SO4 A:1005 , HOH A:1131binding site for residue GOL A 1008
09AC9SOFTWAREGLY A:37 , ASP A:76 , PHE A:77 , THR A:121 , GLN A:126 , ASP A:173binding site for residue GOL A 1009
10AD1SOFTWAREASP B:32 , ASN B:34 , ASP B:36 , VAL B:38 , GLU B:43 , HOH B:1126binding site for residue CA B 1001
11AD2SOFTWAREASP B:68 , ASN B:70 , ASP B:72 , LYS B:74 , GLU B:79 , HOH B:1114binding site for residue CA B 1002
12AD3SOFTWAREASP B:99 , ASN B:101 , ASP B:103 , LYS B:105 , GLU B:107 , GLU B:110binding site for residue CA B 1003
13AD4SOFTWAREASP B:137 , THR B:141 , GLU B:146binding site for residue CA B 1004
14AD5SOFTWAREGLY B:56 , GLN B:57 , GOL B:1009binding site for residue SO4 B 1005
15AD6SOFTWARETHR B:22 , ARG B:23 , TYR B:24 , GLU B:25 , MET B:81binding site for residue SO4 B 1006
16AD7SOFTWAREGLU B:107 , ALA B:108 , SER B:109 , GLU B:124binding site for residue SO4 B 1007
17AD8SOFTWAREGLY B:37 , ASP B:76 , PHE B:77 , GLN B:126 , ASP B:173 , HOH B:1118binding site for residue GOL B 1008
18AD9SOFTWAREGLY B:56 , GLN B:57 , ASP B:58 , ALA B:59 , SO4 B:1005 , HOH B:1124binding site for residue GOL B 1009
19AE1SOFTWAREASP C:32 , ASN C:34 , ASP C:36 , VAL C:38 , GLU C:43 , HOH C:1207binding site for residue CA C 1001
20AE2SOFTWAREASP C:68 , ASN C:70 , ASP C:72 , LYS C:74 , GLU C:79binding site for residue CA C 1002
21AE3SOFTWAREASP C:99 , ASN C:101 , ASP C:103 , LYS C:105 , GLU C:107 , GLU C:110binding site for residue CA C 1003
22AE4SOFTWAREASP C:135 , THR C:141binding site for residue CA C 1004
23AE5SOFTWAREGLU C:107 , ALA C:108 , SER C:109 , GLU C:124binding site for residue SO4 C 1005
24AE6SOFTWAREGLY C:56 , GLN C:57 , ASP C:58binding site for residue SO4 C 1006
25AE7SOFTWAREGLY C:37 , ASP C:76 , PHE C:77 , THR C:121 , GLN C:126 , ASP C:173binding site for residue GOL C 1007

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZCU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ZCU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZCU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZCU)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZCU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:152
                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh.....eehhhhhhhhhhhh....hhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhhh....hhhhhhhhhhhhh.....eehhhhhhhhh.....hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zcu A  22 TRYETLFQALDRNGDGVVDIGELQEGLRNLGIPLGQDAEEKIFTTGDVNKDGKLDFEEFMKYLKDHEKKMKLAFKSLDKNNDGKIEASEIVQSLQTLGLTISEQQAELILQSIDVDGTTVDWNEWRDYFLFNPVTDIEEIIRFWKHSTGIDI 174
                                    31        41        51        61        71        81        91       101       111       121       131       142       152       162       172  
                                                                                                                                               139|                                 
                                                                                                                                                141                                 

Chain B from PDB  Type:PROTEIN  Length:152
                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.....eehhhhhhhhhhhh....hhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhhh....hhhhhhhhhhhh......eehhhhhhhhh.....hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zcu B  22 TRYETLFQALDRNGDGVVDIGELQEGLRNLGIPLGQDAEEKIFTTGDVNKDGKLDFEEFMKYLKDHEKKMKLAFKSLDKNNDGKIEASEIVQSLQTLGLTISEQQAELILQSIDVDTMTVDWNEWRDYFLFNPVTDIEEIIRFWKHSTGIDI 174
                                    31        41        51        61        71        81        91       101       111       121       131     ||142       152       162       172  
                                                                                                                                             137|                                   
                                                                                                                                              139                                   

Chain C from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhh.....eehhhhhhhhhhhh....hhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhhh....hhhhhhhhhhhh....eehhhhhhhhh.....hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zcu C  22 TRYETLFQALDRNGDGVVDIGELQEGLRNLGIPLGQDAEEKIFTTGDVNKDGKLDFEEFMKYLKDHEKKMKLAFKSLDKNNDGKIEASEIVQSLQTLGLTISEQQAELILQSIDVDTVDWNEWRDYFLFNPVTDIEEIIRFWKHSTGIDI 174
                                    31        41        51        61        71        81        91       101       111       121       131     ||144       154       164       174
                                                                                                                                             137|                                 
                                                                                                                                              141                                 

   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZCU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZCU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZCU)

(-) Gene Ontology  (16, 16)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        SCMC1_HUMAN | Q6NUK14n5x 4zcv

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