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(-) Description

Title :  FRAGMENT-BASED DISCOVERY OF A SMALL MOLECULE REVERSIBLE INHIBITOR OF BRUTON'S TYROSINE KINASE
 
Authors :  D. R. Dougan
Date :  31 Mar 15  (Deposition) - 01 Jul 15  (Release) - 05 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Cytoplasmic Tyrosine Kinase, Transcriptional Regulation, Nuclear Factor-Kappab, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. R. Smith, D. R. Dougan, M. Komandla, T. Kanouni, B. Knight, J. D. Lawson, M. Sabat, E. R. Taylor, P. Vu, C. Wyrick
Fragment-Based Discovery Of A Small Molecule Inhibitor Of Bruton'S Tyrosine Kinase.
J. Med. Chem. V. 58 5437 2015
PubMed-ID: 26087137  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B00734

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE BTK
    ChainsA
    EC Number2.7.10.2
    EngineeredYES
    Expression SystemUNIDENTIFIED BACULOVIRUS
    Expression System StrainSF9
    Expression System Taxid10469
    FragmentUNP RESIDUES 416-693
    GeneBTK, AGMX1, ATK, BPK
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymAGAMMAGLOBULINEMIA TYROSINE KINASE,ATK,B-CELL PROGENITOR KINASE,BPK,BRUTON TYROSINE KINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric/Biological Unit (4, 5)
No.NameCountTypeFull Name
14L61Ligand/Ion4-AMINO-8-(5-METHYL-1H-INDAZOL-6-YL)CINNOLINE-3-CARBOXAMIDE
2EDO1Ligand/Ion1,2-ETHANEDIOL
3IMD2Ligand/IonIMIDAZOLE
4IPA1Ligand/IonISOPROPYL ALCOHOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:562 , MET A:596 , GLU A:599 , PHE A:601 , SER A:649 , LEU A:652 , ASP A:653 , ASP A:656binding site for residue IMD A 701
2AC2SOFTWAREHOH A:953binding site for residue IMD A 702
3AC3SOFTWARETHR A:403 , PHE A:404 , TYR A:627 , HOH A:1000binding site for residue IPA A 703
4AC4SOFTWARETHR A:495 , GLN A:496 , LEU A:499 , GLU A:658 , SER A:659 , HOH A:858 , HOH A:876binding site for residue EDO A 704
5AC5SOFTWARELEU A:408 , THR A:410 , GLY A:411 , GLN A:412 , PHE A:413 , GLY A:414 , VAL A:416 , ALA A:428 , THR A:474 , GLU A:475 , MET A:477 , LEU A:528 , ASP A:539 , HOH A:848 , HOH A:900binding site for residue 4L6 A 705

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Z3V)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4Z3V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Z3V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Z3V)

(-) Exons   (0, 0)

(no "Exon" information available for 4Z3V)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:271
                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhh.eeeeeeee......eeeeee...eeeeeee......hhhhhhhhhhhhh.........eeeee......eeee......hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee...hhhhhh.hhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4z3v A 389 GLGYGSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDEES 659
                                   398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658 

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Z3V)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Z3V)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Z3V)

(-) Gene Ontology  (49, 49)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BTK_HUMAN | Q061871aww 1awx 1b55 1btk 1bwn 1k2p 1qly 2ge9 2z0p 3gen 3k54 3ocs 3oct 3p08 3pix 3piy 3piz 3pj1 3pj2 3pj3 4nwm 4ot5 4ot6 4otf 4otq 4otr 4rfy 4rfz 4rg0 4rx5 4yhf 4zly 4zlz 5bpy 5bq0 5fbn 5fbo 5j87 5jrs 5kup 5p9f 5p9g 5p9h 5p9i 5p9j 5p9k 5p9l 5p9m 5t18 5u9d 5vgo

(-) Related Entries Specified in the PDB File

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