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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CW DOMAIN OF ZCWPW2 MUTANT F78R IN COMPLEX WITH HISTONE H3 PEPTIDE
 
Authors :  Y. Liu, W. Tempel, C. Bountra, C. H. Arrowsmith, A. M. Edwards, J. Min, St Genomics Consortium (Sgc)
Date :  26 Mar 15  (Deposition) - 08 Apr 15  (Release) - 08 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B,D  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Structural Genomics, Cw Domain, Structural Genomics Consortium, Sgc, Protein Binding-Structural Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Y. Liu, W. Tempel, C. Bountra, C. H. Arrowsmith, A. M. Edwards, J. Min
Crystal Structure Of The Cw Domain Of Zcwpw2 Mutant F78R In Complex With Histone H3 Peptide
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ZINC FINGER CW-TYPE PWWP DOMAIN PROTEIN 2
    ChainsA, B, C
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET28-MHL
    Expression System StrainBL21(DE3)-V2R-PRARE2
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentCW DOMAIN (UNP RESIDUES 21-78)
    GeneZCWPW2
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymZCWPW2
 
Molecule 2 - HISTONE H3.1
    ChainsD
    EngineeredYES
    FragmentN-TERMINAL TAIL (UNP RESIDUES 2-16)
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHISTONE H3
    SyntheticYES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A   
Biological Unit 2 (1x) B D
Biological Unit 3 (1x)  C 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 30)

Asymmetric Unit (5, 30)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2M3L1Mod. Amino AcidN-TRIMETHYLLYSINE
3SO41Ligand/IonSULFATE ION
4UNX24Ligand/IonUNKNOWN ATOM OR ION
5ZN3Ligand/IonZINC ION
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
1EDO-1Ligand/Ion1,2-ETHANEDIOL
2M3L-1Mod. Amino AcidN-TRIMETHYLLYSINE
3SO41Ligand/IonSULFATE ION
4UNX11Ligand/IonUNKNOWN ATOM OR ION
5ZN-1Ligand/IonZINC ION
Biological Unit 2 (3, 11)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2M3L1Mod. Amino AcidN-TRIMETHYLLYSINE
3SO4-1Ligand/IonSULFATE ION
4UNX9Ligand/IonUNKNOWN ATOM OR ION
5ZN-1Ligand/IonZINC ION
Biological Unit 3 (1, 4)
No.NameCountTypeFull Name
1EDO-1Ligand/Ion1,2-ETHANEDIOL
2M3L-1Mod. Amino AcidN-TRIMETHYLLYSINE
3SO4-1Ligand/IonSULFATE ION
4UNX4Ligand/IonUNKNOWN ATOM OR ION
5ZN-1Ligand/IonZINC ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:33 , CYS A:38 , CYS A:60 , CYS A:71binding site for residue ZN A 1001
2AC2SOFTWAREVAL A:52 , HIS A:54 , LYS C:40 , SER C:74 , GLU C:75binding site for residue SO4 A 1002
3AC3SOFTWARECYS B:33 , CYS B:38 , CYS B:60 , CYS B:71binding site for residue ZN B 1001
4AC4SOFTWARESER A:74 , GLU A:75 , VAL B:52 , ASP B:53 , HIS B:54 , ASP B:55binding site for residue EDO B 1009
5AC5SOFTWARECYS C:33 , CYS C:38 , CYS C:60 , CYS C:71binding site for residue ZN C 1001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Z0R)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4Z0R)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Z0R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Z0R)

(-) Exons   (0, 0)

(no "Exon" information available for 4Z0R)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:57
                                                                                        
               SCOP domains --------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee........eee.hhhhhhhh......hhhhh............... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------- Transcript
                  4z0r A 22 ENMYVNKVWVQCENENCLKWRLLSSEDSAKVDHDEPWYCFMNTDSRYNNCSISEEDR 78
                                    31        41        51        61        71       

Chain B from PDB  Type:PROTEIN  Length:57
                                                                                        
               SCOP domains --------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee........eee.hhhhhhhh......hhhhh............... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------- Transcript
                  4z0r B 22 ENMYVNKVWVQCENENCLKWRLLSSEDSAKVDHDEPWYCFMNTDSRYNNCSISEEDR 78
                                    31        41        51        61        71       

Chain C from PDB  Type:PROTEIN  Length:57
                                                                                        
               SCOP domains --------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee........eee.hhhhhhhh......hhhhh............... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------- Transcript
                  4z0r C 22 ENMYVNKVWVQCENENCLKWRLLSSEDSAKVDHDEPWYCFMNTDSRYNNCSISEEDR 78
                                    31        41        51        61        71       

Chain D from PDB  Type:PROTEIN  Length:10
                                         
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author ..eee..... Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                  4z0r D  1 ARTkQTARKS 10
                               |    10
                               4-M3L  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Z0R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Z0R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Z0R)

(-) Gene Ontology  (30, 30)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        H31_HUMAN | P684311cs9 1ct6 1guw 1o9s 1q3l 2b2t 2b2u 2b2v 2b2w 2c1j 2c1n 2cv5 2kwj 2kwk 2l75 2lbm 2m0o 2ndf 2ndg 2oq6 2ot7 2ox0 2ri7 2uxn 2v89 2vpg 2x0l 3a1b 3afa 3avr 3ayw 3aze 3azf 3azg 3azh 3azi 3azj 3azk 3azl 3azm 3azn 3b95 3kmt 3kqi 3lqi 3lqj 3o34 3o35 3o37 3qj6 3rig 3riy 3sou 3sow 3u31 3u3d 3u4s 3u5n 3u5o 3u5p 3uee 3uef 3uig 3uii 3uik 3v43 3w96 3w97 3w98 3w99 3wa9 3waa 3wkj 3x1s 3x1t 3x1u 3x1v 3zg6 3zvy 4a0j 4a0n 4a7j 4bd3 4c1q 4f4u 4f56 4ft2 4ft4 4fwf 4hon 4i51 4l7x 4lk9 4lka 4llb 4lxl 4n4h 4qbq 4qbr 4qbs 4tn7 4u68 4up0 4uy4 4x3k 4y6l 4yhp 4yhz 4ym5 4ym6 4z2m 5av5 5av6 5av8 5av9 5avb 5avc 5b24 5b2i 5b2j 5b31 5c11 5c13 5c3i 5cpi 5cpj 5cpk 5d6y 5dah 5fb0 5fb1 5ffv 5gse 5gsu 5gt0 5gt3 5gtc 5hjb 5hjc 5hjd 5hyn 5iql 5j3v 5j9s 5jhn 5jin 5jiy 5jj0 5jrg 5kjh 5kji 5kkl 5m5g 5svx 5svy 5t0k 5t0m 5t1g 5t1i 5t8r 5tbn 5tdr 5tdw 5v21 5v22 5va6
        ZCPW2_HUMAN | Q504Y34o62 4z0o

(-) Related Entries Specified in the PDB File

4z0o