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(-) Description

Title :  CO-CRYSTAL STRUCTURE OF THE TANDEM CNB (CNB-A/B) DOMAINS OF HUMAN PKG I BETA WITH CGMP
 
Authors :  J. J. Kim, A. S. Reger, S. T. Arold, C. Kim
Date :  25 Mar 15  (Deposition) - 13 Apr 16  (Release) - 20 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,C,E
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  E  (1x)
Keywords :  Cgmp-Binding Domains, Cgmp Mediated Dimeric Interface, Allosteric Regulatory Domain, Serine-Threonine Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. J. Kim, R. Lorenz, S. T. Arold, R. S. Reger, B. Sankaran, D. E. Casteel F. W. Herberg, C. Kim
Structural Analysis Of The Pkg I Regulatory Domain Reveals Novel Cgmp-Induced Dimeric Interface That Promotes Activation.
Structure 2016
PubMed: search  |  Reference-DOI: 10.1016/J.STR.2016.03.009

(-) Compounds

Molecule 1 - CGMP-DEPENDENT PROTEIN KINASE 1
    ChainsA, C, E
    EC Number2.7.11.12
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPQTEV
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 92-351
    GenePRKG1, PRKG1B, PRKGR1A, PRKGR1B
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymCGK1,CGMP-DEPENDENT PROTEIN KINASE I,CGKI

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit ACE
Biological Unit 1 (1x)AC 
Biological Unit 2 (1x)  E

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
1IPA2Ligand/IonISOPROPYL ALCOHOL
2PCG5Ligand/IonCYCLIC GUANOSINE MONOPHOSPHATE
3SO41Ligand/IonSULFATE ION
Biological Unit 1 (3, 7)
No.NameCountTypeFull Name
1IPA2Ligand/IonISOPROPYL ALCOHOL
2PCG4Ligand/IonCYCLIC GUANOSINE MONOPHOSPHATE
3SO41Ligand/IonSULFATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1IPA-1Ligand/IonISOPROPYL ALCOHOL
2PCG1Ligand/IonCYCLIC GUANOSINE MONOPHOSPHATE
3SO4-1Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:172 , CYS A:173 , PHE A:181 , GLY A:182 , GLU A:183 , LEU A:184 , ALA A:185 , ARG A:192 , THR A:193 , ALA A:194 , HOH A:520 , GLU C:229 , HOH C:506binding site for residue PCG A 401
2AC2SOFTWAREVAL A:283 , ARG A:285 , LEU A:296 , ARG A:297 , PHE A:305 , GLY A:306 , GLU A:307 , LYS A:308 , ALA A:309 , GLU A:313 , ARG A:316 , THR A:317 , ALA A:318 , VAL A:320 , TYR A:351 , HOH A:552binding site for residue PCG A 402
3AC3SOFTWAREGLU A:229 , VAL C:165 , LEU C:172 , PHE C:181 , GLY C:182 , GLU C:183 , LEU C:184 , ALA C:185 , ARG C:192 , THR C:193 , ALA C:194 , HOH C:502 , HOH C:508 , HOH C:518binding site for residue PCG C 401
4AC4SOFTWAREILE C:264 , LEU C:296 , ARG C:297 , PHE C:305 , GLY C:306 , GLU C:307 , LYS C:308 , ALA C:309 , ARG C:316 , THR C:317 , ALA C:318 , VAL C:320 , TYR C:351binding site for residue PCG C 402
5AC5SOFTWAREVAL C:151 , SER C:153 , LEU C:154 , ARG C:192binding site for residue SO4 C 403
6AC6SOFTWAREPHE C:98 , TYR C:99 , CYS C:133 , TYR C:135binding site for residue IPA C 404
7AC7SOFTWAREARG C:265 , ASP C:271 , THR C:272 , ARG C:316binding site for residue IPA C 405
8AC8SOFTWAREASN A:282 , PHE A:295 , THR A:298 , ILE E:146 , VAL E:165 , LEU E:172 , CYS E:173 , PHE E:181 , GLY E:182 , GLU E:183 , LEU E:184 , ALA E:185 , ARG E:192 , THR E:193 , ALA E:194binding site for residue PCG E 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Z07)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4Z07)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Z07)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Z07)

(-) Exons   (0, 0)

(no "Exon" information available for 4Z07)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhh.......hhhhhhhhhhhheeeee....eee........eeeeee..eeeee..eeeeee....eehhhhhhh......eeee...eeeeeehhhhhhhhhh.hhhhhhhhhhhhhhhh......hhhhhhhhhhhheeeee....eee.......eeeeeee..eeeee........eeeeee....ee.hhhhhh......eeee...eeeeeeehhhhhhhh..hhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4z07 A  92 SHVTLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGTVNVTREDSPSEDPVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAY 351
                                   101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351

Chain C from PDB  Type:PROTEIN  Length:258
                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhh......hhhhhhhhhhhheeeee....eee.......eeeeeee..eeeee..eeeeee....ee.hhhhhh......eeee...eeeeeeehhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhheeeee....eee.......eeeeeee..eeeee........eeeeee....ee.............eeee...eeeeeeehhhhhhhh..hhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4z07 C  94 VTLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGTVNVTREDSPSEDPVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAY 351
                                   103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343        

Chain E from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhh......hhhhhhhhhhhheeeee....eee.......eeeeeee..eeeee..eeeeee...eee.hhhhhhh.....eeee...eeeeeeehhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4z07 E  92 SHVTLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMM 217
                                   101       111       121       131       141       151       161       171       181       191       201       211      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Z07)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Z07)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Z07)

(-) Gene Ontology  (29, 29)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KGP1_HUMAN | Q139761zxa 3nmd 3ocp 3od0 3ogj 4ku7 4ku8 4qx5 4qxk 4r4l 4r4m 5j48 5jax

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