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(-) Description

Title :  GTPASE DOMAIN OF HUMAN SEPTIN 9
 
Authors :  S. O. Matos, D. A. Leonardo, J. N. Macedo, H. M. Pereira, A. P. U. Araujo, R. C. Garratt
Date :  13 Mar 15  (Deposition) - 16 Mar 16  (Release) - 16 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.73
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  B  (1x)
Biol. Unit 2:  A  (1x)
Keywords :  Cytoskeleton Component. Septin Gtpase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. O. Matos, D. A. Leonardo, J. N. Macedo, H. M. Pereira, A. P. U. Araujo, R. C. Garratt
Gtpase Domain Of Human Septin 9
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SEPTIN-9
    ChainsB, A
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET28A
    Expression System StrainROSETTA
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 184-453
    GeneSEPT9, KIAA0991, MSF
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMLL SEPTIN-LIKE FUSION PROTEIN MSF-A,MLL SEPTIN-LIKE FUSION PROTEIN,OVARIAN/BREAST SEPTIN,OV/BR SEPTIN,SEPTIN D1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x) B
Biological Unit 2 (1x)A 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1GDP2Ligand/IonGUANOSINE-5'-DIPHOSPHATE
2MG2Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:143 , HIS A:145 , THR A:173 , GLU A:178 , GLN B:31 , SER B:32 , GLY B:33 , LEU B:34 , GLY B:35 , LYS B:36 , SER B:37 , THR B:38 , LYS B:170 , ASP B:172 , VAL B:225 , GLY B:226 , ARG B:241 , MG B:302 , HOH B:406 , HOH B:441 , HOH B:442binding site for residue GDP B 301
2AC2SOFTWARESER B:37 , THR B:64 , GDP B:301 , HOH B:441 , HOH B:442binding site for residue MG B 302
3AC3SOFTWAREGLY A:33 , LEU A:34 , GLY A:35 , LYS A:36 , SER A:37 , THR A:38 , LYS A:170 , ASP A:172 , VAL A:225 , GLY A:226 , ARG A:241 , MG A:302 , HOH A:414 , HOH A:422 , HOH A:437 , HOH A:438 , HOH A:439 , THR B:143 , HIS B:145 , THR B:173 , GLU B:178binding site for residue GDP A 301
4AC4SOFTWARESER A:37 , THR A:64 , GDP A:301 , HOH A:437 , HOH A:438 , HOH A:439binding site for residue MG A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YQF)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Arg B:124 -Lys B:125
2Tyr B:198 -Pro B:199
3Ile B:220 -Pro B:221
4Tyr A:198 -Pro A:199
5Ile A:220 -Pro A:221

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YQF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YQF)

(-) Exons   (0, 0)

(no "Exon" information available for 4YQF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:267
                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.....hhhhhhhhhhhhh........ee..........eeeeeee...eeeeeee.............hhhhhhhhhhhhhhhhhhhhh.............eeeeee.......hhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhhhhhhhhhh......hhhhh.hhhhhhhhhhhhh...ee.....eeeee..eeeeeeee..eeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yqf A  21 GFEFNIMVVGQSGLGKSTLINTLFKSKISRKSVQPTSEERIPKTIEIKSITHDIGVRMKLTVIDTPGFGDHINNENCWQPIMKFINDQYEKYLQEEVNINRKKRIPDTRVHCCLYFIPATGHSLRPLDIEFMKRLSKVVNIVPVIAKADTLTLEERVHFKQRITADLLSNGIDVYPQKEFDEDSEDRLVNEKFREMIPFAVVGSDHEYQVNGKRILGRKTKWGTIEVENTTHCEFAYLRDLLIRTHMQNIKDITSSIHFEAYRVKRL 290
                                    30        40        50        60        70   ||   83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       
                                                                                74|                                                                                                                                                                                                                    
                                                                                 78                                                                                                                                                                                                                    

Chain B from PDB  Type:PROTEIN  Length:241
                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.....hhhhhhhhhhhh........eeeeee..eeeeeee.............hhhhhhhhhhhhhhhhhhhhh.............eeeeee.......hhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhh...ee.........eee....eee.......hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yqf B  21 GFEFNIMVVGQSGLGKSTLINTLFKSRIPKTIEIKSITHDIRMKLTVIDTPGFGDHINNENCWQPIMKFINDQYEKYLQEEVNINRKKRIPDTRVHCCLYFIPATGHSLRPLDIEFMKRLSKVVNIVPVIAKADTLTLEERVHFKQRITADLLSNGIDVYPQKEFEDRLVNEKFREMIPFAVVGSDHEYLGRKTKWGTIEVENTTHCEFAYLRDLLIRTHMQNIKDITSSIHFEAYRVKRL 290
                                    30        40     || 63        73||      88        98       108       118       128       138       148       158       168       178       188       198    || 212       222       239       249       259       269       279       289 
                                                    46|            74|                                                                                                                        203|                    231|                                                   
                                                     60             80                                                                                                                         208                     239                                                   

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YQF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YQF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YQF)

(-) Gene Ontology  (16, 16)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SEPT9_HUMAN | Q9UHD85cyo 5cyp

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4YQF)