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(-) Description

Title :  DOSS GAFA DOMAIN REDUCED CO BOUND CRYSTAL STRUCTURE
 
Authors :  Y. Madrona
Date :  10 Mar 15  (Deposition) - 24 Feb 16  (Release) - 24 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.92
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Doss, Tuberculosis, Heme, Gas Sensor, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Basudhar, Y. Madrona, P. R. Ortiz De Montellano
Mycobacterium Tuberculosis Doss; Kinetics And Structure Of Ligand Binding.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - REDOX SENSOR HISTIDINE KINASE RESPONSE REGULATOR DEVS
    Atcc: 25618
    Chains: A, B
    EC Number: 2.7.13.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22B
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 63-210
    Gene: DEVS, DOSS, MT3218
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS (STRAIN CDC 1551 / OSHKOSH)
    Organism Taxid: 83331
    Strain: CDC 1551 / OSHKOSH

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1CMO2Ligand/IonCARBON MONOXIDE
2HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:84 , GLU A:101 , ILE A:103 , ILE A:111 , HIS A:113 , PRO A:115 , LYS A:116 , GLY A:117 , LEU A:118 , GLY A:119 , VAL A:120 , ILE A:121 , SER A:142 , ILE A:143 , GLY A:144 , PHE A:145 , PRO A:146 , HIS A:149 , MET A:152 , THR A:173 , CMO A:302 , HOH A:409 , HOH A:445binding site for residue HEM A 301
2AC2SOFTWAREPHE A:98 , PRO A:115 , ILE A:121 , TYR A:171 , HEM A:301binding site for residue CMO A 302
3AC3SOFTWAREGLY B:84 , ALA B:85 , PHE B:98 , GLU B:101 , ILE B:103 , VAL B:108 , HIS B:113 , LEU B:114 , PRO B:115 , LYS B:116 , GLY B:117 , LEU B:118 , GLY B:119 , VAL B:120 , ILE B:121 , SER B:142 , ILE B:143 , GLY B:144 , PRO B:146 , HIS B:149 , MET B:152 , PHE B:155 , CMO B:302 , HOH B:408 , HOH B:409binding site for residue HEM B 301
4AC4SOFTWAREPHE B:98 , PRO B:115 , ILE B:121 , TYR B:171 , HEM B:301binding site for residue CMO B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YNR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4YNR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YNR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YNR)

(-) Exons   (0, 0)

(no "Exon" information available for 4YNR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.eeeeeeeee.....eeeeeee..hhhhhhhhh.....hhhhhhhhhh...eee.hhhhh...............eeeeee....eeeeeeee......hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ynr A  61 DPDLEATLRAIVHSATSLVDARYGAMEVHDRQHRVLHFVYEGIDEETVRRIGHLPKGLGVIGLLIEDPKPLRLDDVSAHPASIGFPPYHPPMRTFLGVPVRVSFGTLYLTDKTNGQPFSDDDEVLVQALAAAAGIAVANA 203
                                    70        80        90       100       110       120       130       140       150       160 ||    173       183       193       203
                                                                                                                               162|                                     
                                                                                                                                166                                     


Chain B from PDB  Type:PROTEIN  Length:143
                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh.eeeeeeeee.....eeeeeee..hhhhhhhhh.....hhhhhhhhhh...eee.hhhhh...............eeeeeee....eeeeeeeeee......hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ynr B  61 DPDLEATLRAIVHSATSLVDARYGAMEVHDRQHRVLHFVYEGIDEETVRRIGHLPKGLGVIGLLIEDPKPLRLDDVSAHPASIGFPPYHPPMRTFLGVPVRVRDESFGTLYLTDKTNGQPFSDDDEVLVQALAAAAGIAVANA 203
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YNR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YNR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YNR)

(-) Gene Ontology  (27, 41)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DEVS_MYCTO | P9WGK2: 2w3d 2w3e 2w3f 2w3g 2w3h 2y79 3zxo 4yof
        DEVS_MYCTU | P9WGK3: 2w3d 2w3e 2w3f 2w3g 2w3h 2y79 3zxo 4yof

(-) Related Entries Specified in the PDB File

2w3d 2W3D CONTAINS THE SAME PROTEIN OXIDIZED AND WITHOUT A CO LIGAND.
2w3f 2W3F CONTAINS THE SAME PROTEIN WITHOUT THE CO LIGAND