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(-) Description

Title :  TRANSCRIPTION FACTOR
 
Authors :  J. Li, F. Niu, S. Ouyang, Z. Liu
Date :  12 Feb 15  (Deposition) - 17 Feb 16  (Release) - 30 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.71
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transcription, Dimerization, Innate Immune, Dna Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Li, J. P. Rodriguez, F. Niu, M. Pu, J. Wang, L. W. Hung, Q. Shao, Y. Zhu, W. Ding, Y. Liu, Y. Da, Z. Yao, J. Yang, Y. Zhao, G. H. Wei, G. Cheng, Z. J. Liu, S. Ouyang
Structural Basis For Dna Recognition By Stat6
Proc. Natl. Acad. Sci. Usa V. 113 13015 2016
PubMed-ID: 27803324  |  Reference-DOI: 10.1073/PNAS.1611228113

(-) Compounds

Molecule 1 - SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 6
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPMCSG7
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    FragmentUNP RESIDUES 113-658
    GeneSTAT6
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymIL-4 STAT

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1NI1Ligand/IonNICKEL (II) ION
2PTR2Mod. Amino AcidO-PHOSPHOTYROSINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:466 , HOH A:808 , HOH A:815 , HOH A:816 , ASN B:466binding site for residue NI A 701

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Y5U)

(-) Cis Peptide Bonds  (10, 10)

Asymmetric/Biological Unit
No.Residues
1Ala A:150 -Leu A:151
2Gln A:184 -Glu A:185
3Asn A:417 -Gln A:418
4Pro A:439 -Phe A:440
5Tyr A:616 -Pro A:617
6Gly A:638 -Arg A:639
7Glu B:149 -Ala B:150
8Gly B:416 -Asn B:417
9Tyr B:616 -Pro B:617
10Gly B:638 -Arg B:639

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Y5U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Y5U)

(-) Exons   (0, 0)

(no "Exon" information available for 4Y5U)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:445
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhheeeee....eee...eeeeeeee.hhhhhh.......eeeeeee........ee..eee.eee....eeeeeeeeeee.....eeeeeeee...eeeeee....eee.....hhhhhhhhhhhhhh............eeehhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh............eeehhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh.....eeeeee.......eeeeeeee.....eeeee....hhhhhhhhhhhhhhhh.....ee...eehhhhh........eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y5u A 130 FKTGLRRLQHRVGEIHLLREALKGAELAMLLQETTGELEAAKALVLKRIQIWKRQQQLAGNGAPFEESLAPLQERCESLVDIYSQLQQEVGRASLTGRLDEVLRTLVTSCFLVEKQPPQVLKTQTKFQAGVRFLLGLRFLGAPAKPPLVRADMVTEKQAREEIINNTVPLENSIPGNCCSALFKNLLLKEEKCAVLFSASFTLPIQLQALSLPLVVIVHGNQDNNAKATILWDNAFSEMDRVPFVVAERVPWEKMCETLNLKFMAEVGTNRGLLPEHFLFLAQKIFNDNSLSMEAFQHRSVSWSQFNKEILLGRGFTFWQWFDGVLDLTKRCLRSYWSDRLIIGFISKQYVTSLLLNEPDGTFLLRFSDSEIGGITIAHVIRGQDGSPQIENIQPFSAKDLSIRSLGDRIRDLAQLKNLYPKKPKDEAFRDGRGyVPATIKMTVE 651
                                   139       149 ||  ||182       192       202       212       222       232       242||     262       272       282       292       302       312       322||     347       357       381       391  ||   406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626|   |  646     
                                               151|  ||                                                             243|                                                                  323|                        366|          394|                                                                                                                                                                                                                               626|   |          
                                                153  ||                                                              254                                                                   339                         381           400                                                                                                                                                                                                                                637   |          
                                                   156|                                                                                                                                                                                                                                                                                                                                                                                                                     641-PTR      
                                                    179                                                                                                                                                                                                                                                                                                                                                                                                                                  

Chain B from PDB  Type:PROTEIN  Length:438
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.eeeee....eee...eeeeeeee.hhhhhh.......eeeeeeeehhhhh..ee..eee.eee....eeeeeeeeeee...eeeeeeeeee....eeeeee...eeee.....hhhhhhhhhhhhhhh...........eeehhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh....hhhhh...eeehhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh.....eeeeee.......eeeeeeee.....eeeee....hhhhhhhhhhhhhhhh.....ee...eehhhhh.......eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4y5u B 130 FKTGLRRLQHRVGEIHLLREALAMLLQETTGELEAAKALVLKRIQIWKRQQQLAGNGAPFEESLAPLQERCESLVDIYSQLQQEVASLTGRLDEVLRTLVTSCFLVEKQPPQVLKTQTKFQAGVRFLLGLRFLGAPAKPPLVRADMVTEKQAREEIINNTVPLENSIPGNCCSALFKNLLLKEEKCAVLFSASFTLLPIQLQALSLPLVVIVHGNQDNNAKATILWDNAFSEMDRVPFVVAERVPWEKMCETLNLKFMAEVGTNRGLLPEHFLFLAQKIFNDNSLSMEAFQHRSVSWSQFNKEILLGRGFTFWQWFDGVLDLTKRCLRSYWSDRLIIGFISKQYVTSLLLNEPDGTFLLRFSDSEIGGITIAHVIRGQDGSPQIENIQPFSAKDLSIRSLGDRIRDLAQLKNLYPKKPKDEAFRGRGyVPATIKMTVE 651
                                   139       149 ||    187       197       207       217       227       237    || 259       269       279       289       299       309       319   ||  344       354       364 ||    388     ||402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622   ||  643        
                                               151|                                                           242|                                                                 323|                        366|          394|                                                                                                                                                                                                                                626|  |          
                                                180                                                            255                                                                  339                         381           399                                                                                                                                                                                                                                 638  |          
                                                                                                                                                                                                                                                                                                                                                                                                                                                                     641-PTR      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Y5U)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Y5U)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Y5U)

(-) Gene Ontology  (32, 32)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:150 - Leu A:151   [ RasMol ]  
    Asn A:417 - Gln A:418   [ RasMol ]  
    Gln A:184 - Glu A:185   [ RasMol ]  
    Glu B:149 - Ala B:150   [ RasMol ]  
    Gly A:638 - Arg A:639   [ RasMol ]  
    Gly B:416 - Asn B:417   [ RasMol ]  
    Gly B:638 - Arg B:639   [ RasMol ]  
    Pro A:439 - Phe A:440   [ RasMol ]  
    Tyr A:616 - Pro A:617   [ RasMol ]  
    Tyr B:616 - Pro B:617   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        STAT6_HUMAN | P422261oj5 4y5w 5d39

(-) Related Entries Specified in the PDB File

4y5w