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(-) Description

Title :  CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF THE HUMAN MITOCHONDRIAL CALCIUM UNIPORTER FUSED WITH T4 LYSOZYME
 
Authors :  Y. Lee, C. K. Min, T. G. Kim, H. K. Song, Y. Lim, D. Kim, K. Shin, M. Kang, J. Y S. Youn, J. -G. Lee, J. Y. An, K. R. Park, J. J. Lim, J. H. Kim, J. H. Kim, Z. Y S. Kim, J. Wang, D. H. Kim, S. H. Eom
Date :  22 Jan 15  (Deposition) - 16 Sep 15  (Release) - 14 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Membrane Protein, Calcium Channel, Mitochondria, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Lee, C. K. Min, T. G. Kim, H. K. Song, Y. Lim, D. Kim, K. Shin, M. Kang, J. Y. Kang, H. S. Youn, J. G. Lee, J. Y. An, K. R. Park, J. J. Lim, J. H. Kim, J. H. Kim, Z. Y. Park, Y. S. Kim, J. Wang, D. H. Kim, S. H. Eom
Structure And Function Of The N-Terminal Domain Of The Huma Mitochondrial Calcium Uniporter.
Embo Rep. V. 16 1318 2015
PubMed-ID: 26341627  |  Reference-DOI: 10.15252/EMBR.201540436

(-) Compounds

Molecule 1 - LYSOZYME,CALCIUM UNIPORTER PROTEIN, MITOCHONDRIAL
    Chains: A
    EC Number: 3.2.1.17
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1-161,UNP RESIDUES 75-165
    Gene: E, T4TP126, MCU, C10ORF42, CCDC109A
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: ENTEROBACTERIA PHAGE T4, HOMO SAPIENS
    Organism Taxid: 10665, 9606
    Other Details: THE FUSION PROTEIN OF LYSOZYME (1-161), LINKER GG, CALCIUM UNIPORTER PROTEIN (75-165), AND TAGS LEHHHHHH
    Synonym: COILED-COIL DOMAIN-CONTAINING PROTEIN 109A

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:162 , SER A:163 , ARG A:1089 , ARG A:1094 , ARG A:1096 , HOH A:2605 , HOH A:2617 , HOH A:2707binding site for residue SO4 A 2001
2AC2SOFTWARETHR A:21 , THR A:142 , PRO A:143 , ASN A:144 , ARG A:145 , HOH A:2607 , HOH A:2620 , HOH A:2706binding site for residue SO4 A 2002
3AC3SOFTWAREPHE A:114 , THR A:115 , ASN A:116 , SER A:117 , ASN A:132 , HOH A:2570 , HOH A:2623 , HOH A:2667 , HOH A:2698binding site for residue SO4 A 2003

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XSJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XSJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XSJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XSJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4XSJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:253
                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh.eeeeee.....eeee..eeee...hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.......eeeeee..eeeeee........eeee......hhhhhhhhhhhhh.....eeee...........hhhhhh...eeeee..eeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4xsj A    1 MNIFEMLRIDEGLRLKIYKNTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSVTVVYQNGLPVISVRLPSRRERCQFTLKPISDSVGVFLRQLQEEDRGIDRVAIYSPDGVRVAASTGIDLLLLDDFKLVINDLTYHVRPPK 1164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  ||  1081      1091      1101      1111      1121      1131      1141      1151      1161   
                                                                                                                                                                                            163|                                                                                         
                                                                                                                                                                                            1075
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XSJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XSJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XSJ)

(-) Gene Ontology  (32, 32)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        D9IEF7_BPT4 | D9IEF7: 4s0w 5ndd 5ndz 5t1a 5v83 5v86 5v88 5vba 5xez 5xf1
        MCU_HUMAN | Q8NE86: 4xtb 5bz6 5kue 5kug 5kui 5kuj
UniProtKB/TrEMBL
        D9IEF7_BPT4 | D9IEF7: 4pjz 4pk0 4pla 4qkx 4u15 4u16 4uis 4yc4 5bz6 5i0n

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4XSJ)