Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  ENSEMBLE REFINEMENT OF CYSTATHIONE GAMMA LYASE (CALE6) D7G FROM MICROMONOSPORA ECHINOSPORA
 
Authors :  F. Wang, R. M. Yennamalli, S. Singh, K. Tan, J. S. Thorson, G. N. Phillips Enzyme Discovery For Natural Product Biosynthesis (Natpro)
Date :  18 Jan 15  (Deposition) - 15 Apr 15  (Release) - 15 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H  (10x)
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Natural Product Biosynthesis, Natpro, Lyase, Structural Genomics, Psi-Biology, Enzyme Discovery For Natural Product Biosynthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. M. Yennamalli, K. Tan, F. Wang, L. Bigelow, R. Jedrzejczak, G. Babnigg, C. A. Bingman, A. Joachimiak, M. K. Kharel, S. Singh, J. S. Thorson, G. N. Phillips Jr.
The Crystal Structure Of Cystathione Gamma Lyase (Cale6) From Micromonospora Echinospora
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CALE6
    ChainsA, B, C, D, E, F, G, H
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneCALE6
    MutationYES
    Organism ScientificMICROMONOSPORA ECHINOSPORA
    Organism Taxid1877

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit (10x)ABCDEFGH
Biological Unit 1 (1x)ABCD    
Biological Unit 2 (1x)    EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 116)

Asymmetric Unit (6, 116)
No.NameCountTypeFull Name
1CL29Ligand/IonCHLORIDE ION
2FMT11Ligand/IonFORMIC ACID
3GOL36Ligand/IonGLYCEROL
4LLP8Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
5MES8Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
6MSE24Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (5, 35)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2FMT1Ligand/IonFORMIC ACID
3GOL14Ligand/IonGLYCEROL
4LLP4Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
5MES4Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
6MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (5, 36)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2FMT2Ligand/IonFORMIC ACID
3GOL14Ligand/IonGLYCEROL
4LLP4Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
5MES4Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
6MSE12Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (50, 50)

Asymmetric Unit (50, 50)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:100 , LLP A:197 , VAL A:322 , SER A:323 , LEU A:324 , ARG A:358 , HOH A:567 , HOH A:635 , TYR B:46 , ARG B:48binding site for residue MES A 401
02AC2SOFTWAREARG A:168 , ASP A:216binding site for residue GOL A 402
03AC3SOFTWAREPRO A:17 , SER A:18 , PRO A:27 , HIS A:29 , GLU A:56binding site for residue GOL A 403
04AC4SOFTWARELEU A:184 , ARG A:213binding site for residue GOL A 404
05AC5SOFTWAREARG A:168binding site for residue CL A 405
06AC6SOFTWAREMSE A:337 , ARG B:36binding site for residue CL A 406
07AC7SOFTWARETYR A:46 , TYR B:100 , LLP B:197 , VAL B:322 , SER B:323 , LEU B:324 , THR B:338 , ARG B:358 , GOL B:408binding site for residue MES B 401
08AC8SOFTWAREARG B:253 , GLU B:364 , ASP B:365 , PRO B:366 , GLY C:7 , SER C:248binding site for residue GOL B 402
09AC9SOFTWAREGLU B:65 , ARG B:66 , LEU B:184 , ALA B:185 , ARG B:213binding site for residue GOL B 403
10AD1SOFTWAREALA A:101 , THR B:227binding site for residue GOL B 404
11AD2SOFTWAREARG B:16 , SER B:18 , PRO B:26 , HIS B:29 , GLU B:56binding site for residue GOL B 405
12AD3SOFTWAREVAL B:274 , HIS B:275 , TYR B:276 , GLU B:281 , HIS B:282binding site for residue GOL B 406
13AD4SOFTWAREHIS B:163 , GLY B:166 , ALA B:167 , ASP B:189binding site for residue GOL B 407
14AD5SOFTWAREARG A:48 , THR A:227 , ALA B:101 , GLY B:102 , MES B:401binding site for residue GOL B 408
15AD6SOFTWAREHOH B:583binding site for residue CL B 409
16AD7SOFTWARETYR C:100 , SER C:323 , LEU C:324 , ARG C:358 , TYR D:46 , ARG D:48binding site for residue MES C 401
17AD8SOFTWAREARG C:66 , LEU C:184 , ALA C:185 , ARG C:213binding site for residue GOL C 402
18AD9SOFTWARELEU C:86 , ARG C:168 , LEU C:217 , ALA C:220binding site for residue FMT C 403
19AE1SOFTWAREARG C:112 , ARG D:88 , ASP G:136binding site for residue CL C 405
20AE2SOFTWARETYR C:46 , ARG C:48 , TYR D:100 , LLP D:197 , SER D:323 , LEU D:324 , THR D:338 , ARG D:358 , HOH D:568 , HOH D:624binding site for residue MES D 401
21AE3SOFTWAREGLU D:65 , ARG D:66 , ALA D:67binding site for residue GOL D 402
22AE4SOFTWARETHR D:226 , THR D:227binding site for residue GOL D 403
23AE5SOFTWARELEU D:86 , ARG D:168 , ASP D:216binding site for residue GOL D 404
24AE6SOFTWAREARG D:168binding site for residue CL D 405
25AE7SOFTWAREMSE D:292 , SER D:293binding site for residue CL D 406
26AE8SOFTWARETYR E:100 , ASN E:147 , SER E:323 , GLU E:332 , ARG E:358 , HOH E:558 , HOH E:594 , TYR F:46 , ARG F:48 , GOL F:406binding site for residue MES E 401
27AE9SOFTWAREGLU E:65 , ARG E:66 , LEU E:184 , ALA E:185 , ARG E:213 , HOH E:543binding site for residue GOL E 402
28AF1SOFTWARELEU E:86 , ARG E:168binding site for residue GOL E 403
29AF2SOFTWAREARG E:168 , ASP E:214binding site for residue CL E 404
30AF3SOFTWARETYR E:46 , TYR F:100 , LLP F:197 , VAL F:322 , SER F:323 , LEU F:324 , ARG F:358 , GOL F:402 , HOH F:560binding site for residue MES F 401
31AF4SOFTWAREARG E:48 , THR E:227 , ALA F:101 , GLY F:102 , MES F:401binding site for residue GOL F 402
32AF5SOFTWAREARG F:168binding site for residue GOL F 403
33AF6SOFTWARELEU F:249 , HIS F:252 , HOH F:601 , ARG G:253binding site for residue GOL F 404
34AF7SOFTWAREARG F:253 , LEU G:249 , HIS G:252binding site for residue GOL F 405
35AF8SOFTWARETYR E:100 , MES E:401 , ARG F:48 , THR F:226 , THR F:227 , HOH F:672binding site for residue GOL F 406
36AF9SOFTWAREGLU F:65 , ARG F:213 , HOH F:575binding site for residue GOL F 407
37AG1SOFTWAREPRO F:68 , PHE F:69 , ALA F:70binding site for residue FMT F 408
38AG2SOFTWAREASP F:189binding site for residue CL F 409
39AG3SOFTWARETYR G:100 , LLP G:197 , SER G:323 , LEU G:324 , THR G:338 , ARG G:358 , HOH G:539 , HOH G:590 , TYR H:46 , ARG H:48binding site for residue MES G 401
40AG4SOFTWAREGLU G:65 , ARG G:66 , LEU G:184 , ARG G:213 , HOH G:569binding site for residue GOL G 402
41AG5SOFTWAREARG G:48 , THR G:227 , TYR H:100 , GLY H:102binding site for residue GOL G 403
42AG6SOFTWAREGLU D:281 , ARG G:36 , ARG G:37 , HOH G:685 , GLU H:309binding site for residue GOL G 404
43AG7SOFTWAREALA G:290binding site for residue GOL G 405
44AG8SOFTWARELEU G:86 , ARG G:168 , LEU G:217binding site for residue FMT G 406
45AG9SOFTWAREARG G:168 , ASP G:189binding site for residue CL G 407
46AH1SOFTWARETYR G:46 , TYR H:100 , LLP H:197 , VAL H:322 , SER H:323 , LEU H:324 , THR H:338 , ARG H:358 , HOH H:540 , HOH H:655binding site for residue MES H 401
47AH2SOFTWARELEU H:184 , ALA H:185 , ARG H:213binding site for residue GOL H 402
48AH3SOFTWARELEU H:86 , ARG H:168binding site for residue GOL H 403
49AH4SOFTWAREARG H:168binding site for residue CL H 404
50AH5SOFTWAREMSE H:337binding site for residue CL H 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XQ2)

(-) Cis Peptide Bonds  (16, 159)

Asymmetric Unit
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10Thr A:144 -Pro A:145
21, 2, 3, 4, 6, 7, 8, 9, 10Asn A:147 -Pro A:148
31, 2, 3, 4, 5, 6, 7, 8, 9, 10Thr B:144 -Pro B:145
41, 2, 3, 4, 5, 6, 7, 8, 9, 10Asn B:147 -Pro B:148
51, 2, 3, 4, 5, 6, 7, 8, 9, 10Thr C:144 -Pro C:145
61, 2, 3, 4, 5, 6, 7, 8, 9, 10Asn C:147 -Pro C:148
71, 2, 3, 4, 5, 6, 7, 8, 9, 10Thr D:144 -Pro D:145
81, 2, 3, 4, 5, 6, 7, 8, 9, 10Asn D:147 -Pro D:148
91, 2, 3, 4, 5, 6, 7, 8, 9, 10Thr E:144 -Pro E:145
101, 2, 3, 4, 5, 6, 7, 8, 9, 10Asn E:147 -Pro E:148
111, 2, 3, 4, 5, 6, 7, 8, 9, 10Thr F:144 -Pro F:145
121, 2, 3, 4, 5, 6, 7, 8, 9, 10Asn F:147 -Pro F:148
131, 2, 3, 4, 5, 6, 7, 8, 9, 10Thr G:144 -Pro G:145
141, 2, 3, 4, 5, 6, 7, 8, 9, 10Asn G:147 -Pro G:148
151, 2, 3, 4, 5, 6, 7, 8, 9, 10Thr H:144 -Pro H:145
161, 2, 3, 4, 5, 6, 7, 8, 9, 10Asn H:147 -Pro H:148

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XQ2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XQ2)

(-) Exons   (0, 0)

(no "Exon" information available for 4XQ2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:376
                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.....................................hhhhhhhhhhhhhh....eeeee.hhhhhhhhhhh......eeee....hhhhhhhhhhhhh...eeee....hhhhhhhhhh...eeeeeee..........hhhhhhhhhhh...eeeee.........hhhhhh..eeee..............eeeee.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee........hhhhhhhhh.....eeeeee...hhhhhhhhh...ee.........eee..........hhhhhh.......eeeee....hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xq2 A   4 mRFGTRLVHGGRRPSAGTGDVVPPIHVSTTYERRAQDEPRYFYGRGENPTREELEECLAGLERAPFATVFSSGQAAAATLLSLVRPGQCVVSTDDVYAGTDGLFDLAARQGVRVRYADLTTPEGIAAALAEPDLALVWIETPTNPLLTVVDVAEVSRRAHERGARVVVDNTFASPVLQQPLALGADVSLYSTTkSIAGHADVLGGALVYRDADLHAAVRAYRTTAGNVPGALDCFLVRRGLHTLSLRVHRQVATARVLVERLRASPVVGAVHYPGLPEHPQHAVVKAQmSAPGAIVSFDYLGGPAERLLDRFTLFTCGVSLGGVHSLVECPALmTHRPLSAEARARRGIGESLIRLSVGIEDPQDLAEDLSRALAG 379
                            |       13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193   |   203       213       223       233       243       253       263       273       283       293       303       313       323       333   |   343       353       363       373      
                            |                                                                                                                                                                                              197-LLP                                                                                        292-MSE                                      337-MSE                                      
                            4-MSE                                                                                                                                                                                                                                                                                                                                                                                   

Chain B from PDB  Type:PROTEIN  Length:378
                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhh.....................................hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhh.....eee.....hhhhhhhhhhhh.............hhhhhhhhh...eeeeeee..........hhhhhhhhhhh...eeeee...hhhhhhhhhhhh..eeeee.............eeeee.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee........hhhhhhhhh.....eeeeee...hhhhhhhhh...ee.........eee..........hhhhhhhh.....eeeee....hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4xq2 B   3 GmRFGTRLVHGGRRPSAGTGDVVPPIHVSTTYERRAQDEPRYFYGRGENPTREELEECLAGLERAPFATVFSSGQAAAATLLSLVRPGQCVVSTDDVYAGTDGLFDLAARQGVRVRYADLTTPEGIAAALAEPDLALVWIETPTNPLLTVVDVAEVSRRAHERGARVVVDNTFASPVLQQPLALGADVSLYSTTkSIAGHADVLGGALVYRDADLHAAVRAYRTTAGNVPGALDCFLVRRGLHTLSLRVHRQVATARVLVERLRASPVVGAVHYPGLPEHPQHAVVKAQmSAPGAIVSFDYLGGPAERLLDRFTLFTCGVSLGGVHSLVECPALmTHRPLSAEARARRGIGESLIRLSVGIEDPQDLAEDLSRALAGG 380
                             |      12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192    |  202       212       222       232       242       252       262       272       282       292       302       312       322       332    |  342       352       362       372        
                             4-MSE                                                                                                                                                                                          197-LLP                                                                                        292-MSE                                      337-MSE                                       

Chain C from PDB  Type:PROTEIN  Length:379
                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh.....................hhhhh...........hhhhhhhhhhhhhh....eeeee.hhhhhhhhhhh......eeee....hhhhhhhhhhhhh...eeee....hhhhhhhhh....eeeeeee..........hhhhhhhhhh....eeeee...hhhhhh........eeeee.............eeeee.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee........hhhhhhhhh.....eeeeee...hhhhhhhh....ee.........eee.............hhhhhh....eeeee....hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xq2 C   3 GmRFGTRLVHGGRRPSAGTGDVVPPIHVSTTYERRAQDEPRYFYGRGENPTREELEECLAGLERAPFATVFSSGQAAAATLLSLVRPGQCVVSTDDVYAGTDGLFDLAARQGVRVRYADLTTPEGIAAALAEPDLALVWIETPTNPLLTVVDVAEVSRRAHERGARVVVDNTFASPVLQQPLALGADVSLYSTTkSIAGHADVLGGALVYRDADLHAAVRAYRTTAGNVPGALDCFLVRRGLHTLSLRVHRQVATARVLVERLRASPVVGAVHYPGLPEHPQHAVVKAQmSAPGAIVSFDYLGGPAERLLDRFTLFTCGVSLGGVHSLVECPALmTHRPLSAEARARRGIGESLIRLSVGIEDPQDLAEDLSRALAGGT 381
                             |      12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192    |  202       212       222       232       242       252       262       272       282       292       302       312       322       332    |  342       352       362       372         
                             4-MSE                                                                                                                                                                                          197-LLP                                                                                        292-MSE                                      337-MSE                                        

Chain D from PDB  Type:PROTEIN  Length:376
                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhh.....................hhhhh...........hhhhhhhhhhhhhh....eeeee.hhhhhhhhhhhh.....eeeee...hhhhhhhhhhhhhh..eeeee...hhhhhh.......eeeeeee..........hhhhhhhhhhhh..eeeee...hhhhhhhhhhhh..eeee..............eeeee.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee........hhhhhhhhh.....eeeeee...hhhhhhh.....ee.........eee.......................eeeee....hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xq2 D   4 mRFGTRLVHGGRRPSAGTGDVVPPIHVSTTYERRAQDEPRYFYGRGENPTREELEECLAGLERAPFATVFSSGQAAAATLLSLVRPGQCVVSTDDVYAGTDGLFDLAARQGVRVRYADLTTPEGIAAALAEPDLALVWIETPTNPLLTVVDVAEVSRRAHERGARVVVDNTFASPVLQQPLALGADVSLYSTTkSIAGHADVLGGALVYRDADLHAAVRAYRTTAGNVPGALDCFLVRRGLHTLSLRVHRQVATARVLVERLRASPVVGAVHYPGLPEHPQHAVVKAQmSAPGAIVSFDYLGGPAERLLDRFTLFTCGVSLGGVHSLVECPALmTHRPLSAEARARRGIGESLIRLSVGIEDPQDLAEDLSRALAG 379
                            |       13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193   |   203       213       223       233       243       253       263       273       283       293       303       313       323       333   |   343       353       363       373      
                            4-MSE                                                                                                                                                                                          197-LLP                                                                                        292-MSE                                      337-MSE                                      

Chain E from PDB  Type:PROTEIN  Length:376
                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh....hhhhh............................hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhh......eeeee...hhhhhhhhhhhhhh...eeee.......hhhhhh...eeeeeee..........hhhhhhhhhhhh..eeeee...hhhhhh........eeee..............eeeee.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee........hhhhhhhhh.....eeeeee...hhhhhhhhh...ee.........eee...........hhhhhhh.....eeeee....hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xq2 E   3 GmRFGTRLVHGGRRPSAGTGDVVPPIHVSTTYERRAQDEPRYFYGRGENPTREELEECLAGLERAPFATVFSSGQAAAATLLSLVRPGQCVVSTDDVYAGTDGLFDLAARQGVRVRYADLTTPEGIAAALAEPDLALVWIETPTNPLLTVVDVAEVSRRAHERGARVVVDNTFASPVLQQPLALGADVSLYSTTkSIAGHADVLGGALVYRDADLHAAVRAYRTTAGNVPGALDCFLVRRGLHTLSLRVHRQVATARVLVERLRASPVVGAVHYPGLPEHPQHAVVKAQmSAPGAIVSFDYLGGPAERLLDRFTLFTCGVSLGGVHSLVECPALmTHRPLSAEARARRGIGESLIRLSVGIEDPQDLAEDLSRALA 378
                             |      12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192    |  202       212       222       232       242       252       262       272       282       292       302       312       322       332    |  342       352       362       372      
                             4-MSE                                                                                                                                                                                          197-LLP                                                                                        292-MSE                                      337-MSE                                     

Chain F from PDB  Type:PROTEIN  Length:377
                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh.....................................hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhh.....eeee....hhhhhhhhhhhhhhh.eee.....hhhhhhhhhh...eeeeeee..........hhhhhhhhhhh...eeeee...hhhhhh........eeeee.............eeeee.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee........hhhhhhhhh.....eeeeee...hhhhhhhh....ee.........eee..........hhhhhhhhh....eeeee....hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xq2 F   3 GmRFGTRLVHGGRRPSAGTGDVVPPIHVSTTYERRAQDEPRYFYGRGENPTREELEECLAGLERAPFATVFSSGQAAAATLLSLVRPGQCVVSTDDVYAGTDGLFDLAARQGVRVRYADLTTPEGIAAALAEPDLALVWIETPTNPLLTVVDVAEVSRRAHERGARVVVDNTFASPVLQQPLALGADVSLYSTTkSIAGHADVLGGALVYRDADLHAAVRAYRTTAGNVPGALDCFLVRRGLHTLSLRVHRQVATARVLVERLRASPVVGAVHYPGLPEHPQHAVVKAQmSAPGAIVSFDYLGGPAERLLDRFTLFTCGVSLGGVHSLVECPALmTHRPLSAEARARRGIGESLIRLSVGIEDPQDLAEDLSRALAG 379
                             |      12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192    |  202       212       222       232       242       252       262       272       282       292       302       312       322       332    |  342       352       362       372       
                             4-MSE                                                                                                                                                                                          197-LLP                                                                                        292-MSE                                      337-MSE                                      

Chain G from PDB  Type:PROTEIN  Length:378
                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhh.....................................hhhhhhhhhhhhhh....eeeee.hhhhhhhhhhh......eeee....hhhhhhhhhhhhh...eeee....hhhhhhhhh....eeeeeee..........hhhhhhhhhhh...eeeee...hhhhhhhhhhhh..eeeee.............eeeee.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee........hhhhhhhhh.....eeeeee...hhhhhhhh...............eee..........hhhhhhhh.....eeeee....hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4xq2 G   3 GmRFGTRLVHGGRRPSAGTGDVVPPIHVSTTYERRAQDEPRYFYGRGENPTREELEECLAGLERAPFATVFSSGQAAAATLLSLVRPGQCVVSTDDVYAGTDGLFDLAARQGVRVRYADLTTPEGIAAALAEPDLALVWIETPTNPLLTVVDVAEVSRRAHERGARVVVDNTFASPVLQQPLALGADVSLYSTTkSIAGHADVLGGALVYRDADLHAAVRAYRTTAGNVPGALDCFLVRRGLHTLSLRVHRQVATARVLVERLRASPVVGAVHYPGLPEHPQHAVVKAQmSAPGAIVSFDYLGGPAERLLDRFTLFTCGVSLGGVHSLVECPALmTHRPLSAEARARRGIGESLIRLSVGIEDPQDLAEDLSRALAGG 380
                             |      12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192    |  202       212       222       232       242       252       262       272       282       292       302       312       322       332    |  342       352       362       372        
                             4-MSE                                                                                                                                                                                          197-LLP                                                                                        292-MSE                                      337-MSE                                       

Chain H from PDB  Type:PROTEIN  Length:378
                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhh.....................................hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhh.....eeee....hhhhhhhhhhhhhh..eeee....hhhhhhhhh....eeeeeee..........hhhhhhhhhh....eeeee...hhhhhh........eeeee.............eeeee.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee........hhhhhhhhh.....eeeeee...hhhhhhhhh...ee.........eeehhhhh........hhhhh.....eeeee....hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4xq2 H   3 GmRFGTRLVHGGRRPSAGTGDVVPPIHVSTTYERRAQDEPRYFYGRGENPTREELEECLAGLERAPFATVFSSGQAAAATLLSLVRPGQCVVSTDDVYAGTDGLFDLAARQGVRVRYADLTTPEGIAAALAEPDLALVWIETPTNPLLTVVDVAEVSRRAHERGARVVVDNTFASPVLQQPLALGADVSLYSTTkSIAGHADVLGGALVYRDADLHAAVRAYRTTAGNVPGALDCFLVRRGLHTLSLRVHRQVATARVLVERLRASPVVGAVHYPGLPEHPQHAVVKAQmSAPGAIVSFDYLGGPAERLLDRFTLFTCGVSLGGVHSLVECPALmTHRPLSAEARARRGIGESLIRLSVGIEDPQDLAEDLSRALAGG 380
                             |      12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192    |  202       212       222       232       242       252       262       272       282       292       302       312       322       332    |  342       352       362       372        
                             4-MSE                                                                                                                                                                                          197-LLP                                                                                        292-MSE                                      337-MSE                                       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XQ2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XQ2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XQ2)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    FMT  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    LLP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MES  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    AD1  [ RasMol ]  +environment [ RasMol ]
    AD2  [ RasMol ]  +environment [ RasMol ]
    AD3  [ RasMol ]  +environment [ RasMol ]
    AD4  [ RasMol ]  +environment [ RasMol ]
    AD5  [ RasMol ]  +environment [ RasMol ]
    AD6  [ RasMol ]  +environment [ RasMol ]
    AD7  [ RasMol ]  +environment [ RasMol ]
    AD8  [ RasMol ]  +environment [ RasMol ]
    AD9  [ RasMol ]  +environment [ RasMol ]
    AE1  [ RasMol ]  +environment [ RasMol ]
    AE2  [ RasMol ]  +environment [ RasMol ]
    AE3  [ RasMol ]  +environment [ RasMol ]
    AE4  [ RasMol ]  +environment [ RasMol ]
    AE5  [ RasMol ]  +environment [ RasMol ]
    AE6  [ RasMol ]  +environment [ RasMol ]
    AE7  [ RasMol ]  +environment [ RasMol ]
    AE8  [ RasMol ]  +environment [ RasMol ]
    AE9  [ RasMol ]  +environment [ RasMol ]
    AF1  [ RasMol ]  +environment [ RasMol ]
    AF2  [ RasMol ]  +environment [ RasMol ]
    AF3  [ RasMol ]  +environment [ RasMol ]
    AF4  [ RasMol ]  +environment [ RasMol ]
    AF5  [ RasMol ]  +environment [ RasMol ]
    AF6  [ RasMol ]  +environment [ RasMol ]
    AF7  [ RasMol ]  +environment [ RasMol ]
    AF8  [ RasMol ]  +environment [ RasMol ]
    AF9  [ RasMol ]  +environment [ RasMol ]
    AG1  [ RasMol ]  +environment [ RasMol ]
    AG2  [ RasMol ]  +environment [ RasMol ]
    AG3  [ RasMol ]  +environment [ RasMol ]
    AG4  [ RasMol ]  +environment [ RasMol ]
    AG5  [ RasMol ]  +environment [ RasMol ]
    AG6  [ RasMol ]  +environment [ RasMol ]
    AG7  [ RasMol ]  +environment [ RasMol ]
    AG8  [ RasMol ]  +environment [ RasMol ]
    AG9  [ RasMol ]  +environment [ RasMol ]
    AH1  [ RasMol ]  +environment [ RasMol ]
    AH2  [ RasMol ]  +environment [ RasMol ]
    AH3  [ RasMol ]  +environment [ RasMol ]
    AH4  [ RasMol ]  +environment [ RasMol ]
    AH5  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Asn A:147 - Pro A:148   [ RasMol ]  
    Asn B:147 - Pro B:148   [ RasMol ]  
    Asn C:147 - Pro C:148   [ RasMol ]  
    Asn D:147 - Pro D:148   [ RasMol ]  
    Asn E:147 - Pro E:148   [ RasMol ]  
    Asn F:147 - Pro F:148   [ RasMol ]  
    Asn G:147 - Pro G:148   [ RasMol ]  
    Asn H:147 - Pro H:148   [ RasMol ]  
    Thr A:144 - Pro A:145   [ RasMol ]  
    Thr B:144 - Pro B:145   [ RasMol ]  
    Thr C:144 - Pro C:145   [ RasMol ]  
    Thr D:144 - Pro D:145   [ RasMol ]  
    Thr E:144 - Pro E:145   [ RasMol ]  
    Thr F:144 - Pro F:145   [ RasMol ]  
    Thr G:144 - Pro G:145   [ RasMol ]  
    Thr H:144 - Pro H:145   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4xq2
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q8KNG3_MICEC | Q8KNG3
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  Q8KNG3_MICEC | Q8KNG3
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8KNG3_MICEC | Q8KNG34q31 4u1t 4u2h

(-) Related Entries Specified in the PDB File

4q31 ENSEMBLE REFINEMENT OF 4Q31 RELATED ID: NATPRO-GO.111134 RELATED DB: TARGETTRACK