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(-) Description

Title :  CRYSTAL STRUCTURE OF TIMELESS_PAB DOMAIN NATIVE FORM
 
Authors :  S. Xie, C. Qian
Date :  06 Jan 15  (Deposition) - 30 Sep 15  (Release) - 14 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Dna Damage Response, Replication (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Xie, O. Mortusewicz, H. T. Ma, P. Herr, R. R. Poon, T. Helleday, C. Qia
Timeless Interacts With Parp-1 To Promote Homologous Recombination Repair.
Mol. Cell V. 60 163 2015
PubMed-ID: 26344098  |  Reference-DOI: 10.1016/J.MOLCEL.2015.07.031

(-) Compounds

Molecule 1 - PROTEIN TIMELESS HOMOLOG
    Chains: A, C, B, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: PAB DOMAIN (UNP RESIDUES 1000-1098)
    Gene: TIMELESS, TIM, TIM1, TIMELESS1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HTIM

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4XHT)

(-) Sites  (0, 0)

(no "Site" information available for 4XHT)

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:1038 -C:1038

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XHT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XHT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XHT)

(-) Exons   (0, 0)

(no "Exon" information available for 4XHT)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:94
                                                                                                                               
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh.hhhhhhhhhhhhhhhhhhhh.......ee....hhhhhhhhhhhhhhhhhhhhh............ee....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                4xht A 1005 NLGQSLHQEGFSIPLLWLQNCLIRAADDREEDGCSQAVPLVPLTEENEEAMENEQFQQLLRKLGVRPPASGQETFWRIPAKLSPTQLRRAAASL 1098
                                  1014      1024      1034      1044      1054      1064      1074      1084      1094    


Chain B from PDB  Type:PROTEIN  Length:92
                                                                                                                             
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh...ee....hhhhhhhhhhhhhhhhhhhhh............ee....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                4xht B 1004 ENLGQSLHQEGFSIPLLWLQNCLIRAADDREESQAVPLVPLTEENEEAMENEQFQQLLRKLGVRPPASGQETFWRIPAKLSPTQLRRAAASL 1098
                                  1013      1023      1033 ||   1046      1056      1066      1076      1086      1096  
                                                        1035|                                                           
                                                         1039                                                           


Chain C from PDB  Type:PROTEIN  Length:94
                                                                                                                               
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh.hhhhhhhhhhhhhhhhhhhh.......ee....hhhhhhhhhhhhhhhhhhhhh............ee....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                4xht C 1005 NLGQSLHQEGFSIPLLWLQNCLIRAADDREEDGCSQAVPLVPLTEENEEAMENEQFQQLLRKLGVRPPASGQETFWRIPAKLSPTQLRRAAASL 1098
                                  1014      1024      1034      1044      1054      1064      1074      1084      1094    


Chain D from PDB  Type:PROTEIN  Length:89
                                                                                                                          
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh.hhhhhhhhhhhhhhhhhhhh...ee....hhhhhhhhhhhhhhhhhhhhh............ee....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                4xht D 1006 LGQSLHQEGFSIPLLWLQNCLIRAADDRESQAVPLVPLTEENEEAMENEQFQQLLRKLGVRPPASGQETFWRIPAKLSPTQLRRAAASL 1098
                                  1015      1025      1039      1049      1059      1069      1079      1089         
                                                     1034|                                                           
                                                      1039
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XHT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XHT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XHT)

(-) Gene Ontology  (27, 27)

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  Cis Peptide Bonds
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 Databases and Analysis Tools

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  4xht
    Family and Domain Information: ProDom | SYSTERS
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  TIM_HUMAN | Q9UNS1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TIM_HUMAN | Q9UNS1: 4xhu 4xhw 5mqi

(-) Related Entries Specified in the PDB File

4xhu 4xhw