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(-) Description

Title :  STRUCTURE OF THE NUCLEASE SUBUNIT OF HUMAN MITOCHONDRIAL RNASE P (MRPP3) AT 1.98A
 
Authors :  L. Reinhard, S. Sridhara, B. M. Hallberg
Date :  31 Dec 14  (Deposition) - 13 May 15  (Release) - 01 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.98
Chains :  Asym./Biol. Unit :  A
Keywords :  Ppr Domain, Zinc Binding Domain, Metallonuclease, Rnase P, Mitochondria, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Reinhard, S. Sridhara, B. M. Hallberg
Structure Of The Nuclease Subunit Of Human Mitochondrial Rnase P.
Nucleic Acids Res. V. 43 5664 2015
PubMed-ID: 25953853  |  Reference-DOI: 10.1093/NAR/GKV481

(-) Compounds

Molecule 1 - MITOCHONDRIAL RIBONUCLEASE P PROTEIN 3
    Chains: A
    EC Number: 3.1.26.5
    Engineered: YES
    Expression System: ESCHERICHIA COLI KRX
    Expression System Taxid: 1452720
    Fragment: UNP RESIDUES 207-583
    Gene: KIAA0391, MRPP3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MITOCHONDRIAL RNASE P PROTEIN 3

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2ZN1Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:348 , CYS A:351 , HIS A:557 , CYS A:578binding site for residue ZN A 601
2AC2SOFTWARELYS A:333 , TRP A:335 , HOH A:708binding site for residue GOL A 602
3AC3SOFTWAREARG A:494 , GLY A:523 , HOH A:758binding site for residue GOL A 603

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XGM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XGM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XGM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XGM)

(-) Exons   (0, 0)

(no "Exon" information available for 4XGM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:341
                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhh......hhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh....eeeeee....................hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.....eeeehhhhh...hhhhhhhhhhhhh....eeeeee.hhhh..hhhhhhhheeeee.....hhhhhhhhhhh...eee......hhhhhhhhhhhhhhh..ee...ee..........ee...eeeeee..............eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xgm A 207 TLEPRGYSLLIRGLIHSDRWREALLLLEDIKKVITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNKLLDILSYLRNNQLYPGESFAHSIKTWFESVPGKQWKGQFTTVRKSGQCSGCGKTIESIQLSPEEYECLKGKIMRDVITTPQELKRFENFIKSRPPFDVVIDGLNVAKMESQLLLNVVSQLAKRNLRLLVLGRKHMLRDEMEEVQKQASCFFADDIDDPFLLYATLHSGNHCRFITRDLMDAKTQRLFFKWQQGHQLAIVSKLTFQRILSYDTVVQTTGDSWHIPYDEDLVERCSCEVPTKWLCLHQK 582
                                   216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376||     394       404       414 ||    429       439       449||     466       478       488       498  ||   516       526  ||   541       551       561       571       581 
                                                                                                                                                                                                    377|                           416|                         450|              475|                    501|                529|                                               
                                                                                                                                                                                                     386                            422                          458               478                     510                 535
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XGM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XGM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XGM)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  4xgm
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  MRRP3_HUMAN | O15091
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  3.1.26.5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MRRP3_HUMAN | O15091: 4rou 4xgl

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4XGM)