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(-) Description

Title :  CRYSTAL STRUCTURE OF WILD TYPE HUMAN ALARS CATALYTIC DOMAIN
 
Authors :  H. Zhou, W. He, X. L. Yang
Date :  24 Dec 14  (Deposition) - 17 Feb 16  (Release) - 17 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.28
Chains :  Asym./Biol. Unit :  A
Keywords :  Trna Synthetase, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  H. Zhou, X. L. Yang
Crystal Structure Of Wild Type Human Alars Catalytic Domain
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ALANINE--TRNA LIGASE, CYTOPLASMIC
    ChainsA
    EC Number6.1.1.7
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET28A
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentCATALYTIC DOMAIN
    GeneAARS
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymALANYL-TRNA SYNTHETASE,ALARS,RENAL CARCINOMA ANTIGEN NY-REN- 42

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1A5A1Ligand/Ion'5'-O-(N-(L-ALANYL)-SULFAMOYL)ADENOSINE
2EDO5Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:44 , ARG A:77 , TYR A:93 , HIS A:94 , HIS A:95 , PHE A:98 , MET A:100 , TRP A:176 , GLU A:189 , GLU A:213 , ILE A:214 , ASN A:216 , VAL A:218 , ASP A:239 , THR A:240 , GLY A:241 , GLY A:243 , ARG A:246 , EDO A:503 , HOH A:702 , HOH A:711 , HOH A:790 , HOH A:953binding site for residue A5A A 501
2AC2SOFTWAREHIS A:336 , ALA A:341 , SER A:342 , ARG A:343 , LEU A:383 , HOH A:759binding site for residue EDO A 502
3AC3SOFTWAREGLU A:189 , A5A A:501 , HOH A:837 , HOH A:953 , HOH A:1087 , HOH A:1088binding site for residue EDO A 503
4AC4SOFTWAREMET A:171 , ARG A:224 , ASN A:317 , TYR A:322 , HOH A:602 , HOH A:629binding site for residue EDO A 504
5AC5SOFTWAREPHE A:267 , PRO A:278 , TYR A:279 , TYR A:295 , HOH A:620 , HOH A:681 , HOH A:908binding site for residue EDO A 505
6AC6SOFTWAREGLN A:12 , TYR A:25 , ARG A:277 , HOH A:607 , HOH A:623 , HOH A:666 , HOH A:684binding site for residue EDO A 506

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XEM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XEM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XEM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XEM)

(-) Exons   (0, 0)

(no "Exon" information available for 4XEM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:377
                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh..ee..................hhhhhhhhhhh......hhhhhh.eeeeeeeee...hhhhh........eeeeeeeee....hhhhhhhhhhhhhhh....hhh.eeeeee..hhhhh...hhhhhhhhhhh..hhh.eeeehhhhhee.....eeeeeeeeeeee......hhhhh......eeeeeeeeeeeeee.....eeeeeeeeeeeeeehhhhhhhhh...hhhhh..hhhhhhhhhhhhh.......hhhhh..hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xem A   4 TLTASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRAANTQKCIRAGDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIPIERLYVTYFGGDEAAGLEADLECKQIWQNLGLDDTKILPGNMKDNFWEMGDTGPCGPCSEIHYDRIGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHARTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDAFPELKKDPDMVKDIINEEEVQFLK 384
                                    13        23        33        43        53        63        73     || 87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       
                                                                                                      79|                                                                                                                                                                                                                                                                                                            
                                                                                                       84                                                                                                                                                                                                                                                                                                            

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XEM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XEM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XEM)

(-) Gene Ontology  (35, 35)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SYAC_HUMAN | P495884xeo 5knn 5t5s 5t76

(-) Related Entries Specified in the PDB File

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