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(-) Description

Title :  CRYSTAL STRUCTURE OF THE E396D SNP VARIANT OF THE MYOCILIN OLFACTOMEDIN DOMAIN
 
Authors :  R. K. Donegan, D. M. Freeman, R. L. Lieberman
Date :  14 Nov 14  (Deposition) - 01 Apr 15  (Release) - 01 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta Propeller, 5 Bladed Propeller, Olfactomedin, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. K. Donegan, S. E. Hill, D. M. Freeman, E. Nguyen, S. D. Orwig, K. C. Turnage, R. L. Lieberman
Structural Basis For Misfolding In Myocilin-Associated Glaucoma.
Hum. Mol. Genet. V. 24 2111 2015
PubMed-ID: 25524706  |  Reference-DOI: 10.1093/HMG/DDU730

(-) Compounds

Molecule 1 - MYOCILIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneMYOC, GLC1A, TIGR
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMYOCILIN 55 KDA SUBUNIT,TRABECULAR MESHWORK-INDUCED GLUCOCORTICOID RESPONSE PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 7)

Asymmetric/Biological Unit (5, 7)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2GOL3Ligand/IonGLYCEROL
3NA1Ligand/IonSODIUM ION
4P6G1Ligand/IonHEXAETHYLENE GLYCOL
5PG41Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:380 , ASN A:428 , ALA A:429 , ILE A:477 , ASP A:478 , HOH A:833 , HOH A:836binding site for residue CA A 601
2AC2SOFTWARETRP A:373 , SER A:441 , SER A:444 , ASN A:469 , LYS A:472 , TYR A:473 , SER A:474 , HOH A:944 , HOH A:948 , HOH A:963binding site for residue GOL A 602
3AC3SOFTWAREMET A:271 , ARG A:272 , PRO A:274 , VAL A:328 , VAL A:329 , ASP A:478 , ASN A:480 , PHE A:487 , HOH A:898 , HOH A:899 , HOH A:959binding site for residue GOL A 603
4AC4SOFTWARELYS A:314 , VAL A:315 , HIS A:316 , ILE A:317 , GLU A:352 , TYR A:442 , HOH A:848binding site for residue GOL A 604
5AC5SOFTWARETRP A:250 , SER A:372 , GLN A:424 , LYS A:500 , HOH A:733 , HOH A:742 , HOH A:791binding site for residue PG4 A 605
6AC6SOFTWAREPRO A:274 , LYS A:275 , TYR A:330 , ASP A:384 , GLU A:385 , PRO A:481 , HOH A:970binding site for residue P6G A 606
7AC7SOFTWAREGLY A:326 , ASP A:380 , LEU A:381 , ASP A:478 , HOH A:832binding site for residue NA A 607

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:245 -A:433

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:278 -Pro A:279

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WXS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WXS)

(-) Exons   (0, 0)

(no "Exon" information available for 4WXS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:259
                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee...eeeee..hhhhh.eeeee............eeeee.....eeeeeee.hhhhhhhh...eeeeeeeee.....eee..eeeee.....eeeeee.....eeeeee....................eeeee..eeeeee.......eeeeeee......eeeeeeeeee.hhh.eeeee..eeeeeee....eeeeeeeee.....eeeeeeeee.....eeeeeee....eeeeee..eeeee.eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wxs A 244 GCGELVWVGEPLTLRTAETITGKYGVWMRDPKPTYPYTQETTWRIDTVGTDVRQVFEYDLISQFMQGYPSKVHILPRPLESTGAVVYSGSLYFQGAESRTVIRYELNTETVKAEKEIPGAGYHGQFPYSWGGYTDIDLAVDEAGLWVIYSTDDAKGAIVLSKLNPENLELEQTWETNIRKQSVANAFIICGTLYTVSSYTSADATVNFAYDTGTGISKTLTIPFKNRYKYSSMIDYNPLEKKLFAWDNLNMVTYDIKLS 502
                                   253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493         

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WXS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WXS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WXS)

(-) Gene Ontology  (44, 44)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Tyr A:278 - Pro A:279   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MYOC_HUMAN | Q999724wxq 4wxu

(-) Related Entries Specified in the PDB File

4wxq 4WXQ IS THE WILD TYPE STRUCTURE OF THIS PROTEIN DOMAIN.
4wxu