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(-) Description

Title :  AKR1C3 COMPLEXED WITH BREAKDOWN PRODUCT OF N-(TERT-BUTYL)-2-(2-CHLORO-4-(((3-MERCAPTO-5-METHYL-4H-1,2,4-TRIAZOL-4-YL)AMINO)METHYL)-6-METHOXYPHENOXY)ACETAMIDE
 
Authors :  C. J. Squire, J. U. Flanagan, Y. Yosaatmadja
Date :  24 Oct 14  (Deposition) - 05 Nov 14  (Release) - 05 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Oxidoreductase, Inhibitor, Complex, Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Y. Yosaatmadja, R. -W. Ko, J. U. Flanagan, C. J. Squire
Breakdown Product Of N-(Tert-Butyl)-2-(2-Chloro-4-(((3-Mercapto-5-Methyl-4H-1, 2, 4-Triazol-4-Yl)Amino)Methyl)-6-Methoxyphenoxy)Acetamide Trapped In Active Site Of Akr1C3
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ALDO-KETO REDUCTASE FAMILY 1 MEMBER C3
    ChainsA
    EC Number1.-.-.-, 1.1.1.357, 1.1.1.112, 1.1.1.188, 1.1.1.239, 1.1.1.64, 1.3.1.20
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Cell LineBL21(DE3)
    Expression System PlasmidPET22B
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GeneAKR1C3, DDH1, HSD17B5, KIAA0119, PGFS
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Synonym17-BETA-HYDROXYSTEROID DEHYDROGENASE TYPE 5,17-BETA-HSD 5,3- ALPHA-HSD TYPE II,BRAIN,3-ALPHA-HYDROXYSTEROID DEHYDROGENASE TYPE 2, 3-ALPHA-HSD TYPE 2,CHLORDECONE REDUCTASE HOMOLOG HAKRB,DIHYDRODIOL DEHYDROGENASE 3,DD3,DIHYDRODIOL DEHYDROGENASE TYPE I,HA1753,INDANOL DEHYDROGENASE,PROSTAGLANDIN F SYNTHASE,PGFS,TESTOSTERONE 17-BETA- DEHYDROGENASE 5,TRANS-1,2-DIHYDROBENZENE-1,2-DIOL DEHYDROGENASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric/Biological Unit (4, 5)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
3YY11Ligand/Ion5-METHYL-4H-1,2,4-TRIAZOLE-3-THIOL
4YY21Ligand/Ion2-[4-(AMINOMETHYL)-2-CHLORO-6-METHOXYPHENOXY]-N-TERT-BUTYLACETAMIDE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:22 , THR A:23 , TYR A:24 , ASP A:50 , TYR A:55 , HIS A:117 , SER A:166 , ASN A:167 , GLN A:190 , TYR A:216 , SER A:217 , ALA A:218 , LEU A:219 , GLY A:220 , SER A:221 , GLN A:222 , LEU A:236 , ALA A:253 , LEU A:268 , ALA A:269 , LYS A:270 , SER A:271 , TYR A:272 , ARG A:276 , GLN A:279 , ASN A:280 , YY1 A:403 , HOH A:563 , HOH A:569 , HOH A:597 , HOH A:625 , HOH A:631 , HOH A:668 , HOH A:678binding site for residue NAP A 401
2AC2SOFTWARETRP A:86 , SER A:118 , SER A:129 , ASN A:167 , TYR A:216 , PHE A:306 , PHE A:311 , PRO A:318 , YY1 A:403 , HOH A:627binding site for residue YY2 A 402
3AC3SOFTWARETYR A:24 , LEU A:54 , TYR A:55 , HIS A:117 , NAP A:401 , YY2 A:402 , HOH A:597binding site for residue YY1 A 403
4AC4SOFTWAREGLN A:6 , PRO A:17 , VAL A:18 , LEU A:19 , GLY A:45 , PHE A:46 , ARG A:47 , HIS A:48 , PHE A:284binding site for residue EDO A 404
5AC5SOFTWAREPHE A:197 , ARG A:199 , HOH A:576 , HOH A:580 , HOH A:671binding site for residue EDO A 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WRH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WRH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WRH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WRH)

(-) Exons   (0, 0)

(no "Exon" information available for 4WRH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.....eee.eeee........hhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhhhhhh...hhhhheeeeeehhhhhhhhhhhhhhhhhhhhhh...eeeeee..........................hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhh.........eeeee......hhhhhhhhhhh..eeeee.................hhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhh..hhhhhhhhhh.........hhhhhh...hhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wrh A   6 QCVKLNDGHFMPVLGFGTYAPPEVPRSKALEVTKLAIEAGFRHIDSAHLYNNEEQVGLAIRSKIADGSVKREDIFYTSKLWSTFHRPELVRPALENSLKKAQLDYVDLYLIHSPMSLKPGEELSPTDENGKVIFDIVDLCTTWEAMEKCKDAGLAKSIGVSNFNRRQLEMILNKPGLKYKPVCNQVECHPYFNRSKLLDFCKSKDIVLVAYSALGSQRDKRWVDPNSPVLLEDPVLCALAKKHKRTPALIALRYQLQRGVVVLAKSYNEQRIRQNVQVFEFQLTAEDMKAIDGLDRNLHYFNSDSFASHPNYPYSD 321
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315      

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WRH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WRH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WRH)

(-) Gene Ontology  (62, 62)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AK1C3_HUMAN | P423301ry0 1ry8 1s1p 1s1r 1s2a 1s2c 1xf0 1zq5 2f38 2fgb 3r43 3r58 3r6i 3r7m 3r8g 3r8h 3r94 3ufy 3ug8 3ugr 3uwe 4dbs 4dbu 4dbw 4dz5 4fa3 4fal 4fam 4h7c 4hmn 4wdt 4wdu 4wdw 4wdx 4xvd 4xve 4yvv 4yvx 4zfc 5hnt 5hnu 5jm5

(-) Related Entries Specified in the PDB File

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