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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN SUMO E2-CONJUGATING ENZYME (UBC9) IN COMPLEX WITH E1-ACTIVATING ENZYME (UBA2) UBIQUITIN FOLD DOMAIN (UFD)
 
Authors :  L. E. Boucher, K. H. Reiter, M. J. Matunis, J. Bosch
Date :  19 Aug 14  (Deposition) - 09 Sep 15  (Release) - 09 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Sumo, E2-Activating Enzyme, Ubc9, E1-Conjugating Enzyme, Uba2, Ubiquitin Fold Domain, Ufd, Ubiquitin, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. H. Reiter, L. E. Boucher, J. Bosch, M. J. Matunis
Crystal Structure Of Human Sumo Complex
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SUMO-CONJUGATING ENZYME UBC9
    ChainsA
    EC Number6.3.2.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneUBE2I, UBC9, UBCE9
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymSUMO-PROTEIN LIGASE,UBIQUITIN CARRIER PROTEIN 9,UBIQUITIN CARRIER PROTEIN I,UBIQUITIN-CONJUGATING ENZYME E2 I,UBIQUITIN-PROTEIN LIGASE I,P18
 
Molecule 2 - SUMO-ACTIVATING ENZYME SUBUNIT 2
    ChainsB
    EC Number6.3.2.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentUNP RESIDUES 445-561
    GeneUBA2, SAE2, UBLE1B, HRIHFB2115
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymANTHRACYCLINE-ASSOCIATED RESISTANCE ARX,UBIQUITIN-LIKE 1- ACTIVATING ENZYME E1B,UBIQUITIN-LIKE MODIFIER-ACTIVATING ENZYME 2

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1FMT1Ligand/IonFORMIC ACID
2GOL1Ligand/IonGLYCEROL
3K1Ligand/IonPOTASSIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:134 , ALA B:445binding site for residue FMT A 201
2AC2SOFTWAREPHE B:473 , TYR B:526binding site for residue GOL B 601
3AC3SOFTWAREGLU B:499 , HOH B:731binding site for residue K B 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4W5V)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Tyr A:68 -Pro A:69
2Glu A:78 -Pro A:79
3Ser B:444 -Ala B:445
4Lys B:540 -Asp B:541
5Val B:547 -Gly B:548
6Gly B:548 -Asp B:549

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4W5V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4W5V)

(-) Exons   (0, 0)

(no "Exon" information available for 4W5V)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.....eeeeee.....eeeeeeeeeee..........eeeeeee..........eeee................hhhhh.........hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w5v A   1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        

Chain B from PDB  Type:PROTEIN  Length:106
                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee.....hhhhhhh...........eeeee.....eeee.............hhhhhh.....eeeeee.....eeeeeeee.........eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 4w5v B 444 SASKPEVTVRLNVHKVTVLTLQDKIVKEKFAMVAPDVQIEDGKGTILISSEEGETEANNHKKLSEFGIRNGSRLQADDFLQDYTLLINILHSEDLGKDVEFEVVGD 549
                                   453       463       473       483       493       503       513       523       533       543      

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4W5V)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4W5V)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4W5V)

(-) Gene Ontology  (41, 51)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SAE2_HUMAN | Q9UBT21y8q 1y8r 2px9 3kyc 3kyd 5fq2
        UBC9_HUMAN | P632791a3s 1kps 1z5q 1z5s 2grn 2gro 2grp 2grq 2grr 2o25 2pe6 2px9 2xwu 3a4s 3uin 3uio 3uip 4y1l 5d2m 5f6d 5f6e 5f6u 5f6v 5f6w 5f6x 5f6y 5fq2

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4W5V)