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(-) Description

Title :  CRYSTAL STRUCTURE OF JNK1 BOUND TO A MKK7 DOCKING MOTIF
 
Authors :  J. Kragelj, A. Palencia, M. H. Nanao, D. Maurin, G. Bouvignies, M. Black M. Ringkjobing-Jensen
Date :  20 Aug 14  (Deposition) - 25 Mar 15  (Release) - 06 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.34
Chains :  Asym./Biol. Unit :  A,B,C,D,F,G,H,I
Keywords :  Transferase, Jnk1, Intrinsically Disordered Domains, Mkk7 (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Kragelj, A. Palencia, M. H. Nanao, D. Maurin, G. Bouvignies, M. Blackledge, M. R. Jensen
Structure And Dynamics Of The Mkk7-Jnk Signaling Complex.
Proc. Natl. Acad. Sci. Usa V. 112 3409 2015
PubMed-ID: 25737554  |  Reference-DOI: 10.1073/PNAS.1419528112

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE 8
    ChainsA, B, C, D
    EC Number2.7.11.24
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMAP KINASE 8, MAPK 8, JNK-46, STRESS-ACTIVATED PROTEIN KINASE 1C, SAPK1C, STRESS-ACTIVATED PROTEIN KINASE JNK1, C-JUN N-TERMI NAL KINASE 1, JNK1
 
Molecule 2 - DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 7
    ChainsF, G, H, I
    FragmentRESIDUES 37-48
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMAP KINASE KINASE 7, MAPKK 7, JNK-ACTIVATING KINASE 2, MAPK/ERK KINASE 7, MEK 7, STRESS-ACTIVATED PROTEIN KINASE KINASE 4, SAPK KINASE 4, SAPKK-4, SAPKK4, C-JUN N-TERMINAL KINASE KINASE 2, JNK KINASE 2, JNKK 2, MKK7
    SyntheticYES

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit ABCDFGHI

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 20)

Asymmetric/Biological Unit (2, 20)
No.NameCountTypeFull Name
1ANP4Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2SO416Ligand/IonSULFATE ION

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREILE A:32 , GLY A:33 , SER A:34 , GLY A:35 , ALA A:36 , GLY A:38 , VAL A:40 , ALA A:53 , LYS A:55 , ILE A:86 , MET A:108 , GLU A:109 , MET A:111 , ASN A:114 , SER A:155 , ASN A:156 , LEU A:168BINDING SITE FOR RESIDUE ANP A1000
02AC2SOFTWAREILE B:32 , GLY B:33 , SER B:34 , VAL B:40 , ALA B:53 , LYS B:55 , MET B:108 , GLU B:109 , MET B:111 , ASN B:114 , ASP B:151 , LYS B:153 , SER B:155 , ASN B:156 , LEU B:168 , ASP B:169BINDING SITE FOR RESIDUE ANP B1000
03AC3SOFTWAREILE C:32 , GLY C:33 , SER C:34 , GLY C:35 , GLN C:37 , GLY C:38 , VAL C:40 , ALA C:53 , LYS C:55 , ILE C:86 , GLU C:109 , MET C:111 , ASN C:114 , SER C:155 , ASN C:156 , LEU C:168 , ASP C:169 , HOH C:2060BINDING SITE FOR RESIDUE ANP C1000
04AC4SOFTWAREILE D:32 , VAL D:40 , ALA D:53 , MET D:108 , GLU D:109 , MET D:111 , ASN D:114 , LYS D:153 , SER D:155 , ASN D:156 , LEU D:168 , HOH D:2069BINDING SITE FOR RESIDUE ANP D1000
05AC5SOFTWARESO4 A:1366 , ARG C:263 , ARG D:263BINDING SITE FOR RESIDUE SO4 C1364
06AC6SOFTWAREARG B:72 , ARG B:150 , ARG B:174BINDING SITE FOR RESIDUE SO4 B1363
07AC7SOFTWARELYS A:68 , ARG A:72 , ARG A:150 , ARG A:174BINDING SITE FOR RESIDUE SO4 A1364
08AC8SOFTWAREARG B:25 , LEU B:48BINDING SITE FOR RESIDUE SO4 B1364
09AC9SOFTWARELYS A:30 , ARG H:38 , ARG H:40BINDING SITE FOR RESIDUE SO4 H1049
10BC1SOFTWAREARG A:189 , ARG A:192 , TYR A:230 , HOH A:2039 , THR B:255BINDING SITE FOR RESIDUE SO4 A1365
11BC2SOFTWAREARG D:174 , GLY D:177 , THR D:178 , SER D:179BINDING SITE FOR RESIDUE SO4 D1365
12BC3SOFTWARELYS B:250 , ARG B:257BINDING SITE FOR RESIDUE SO4 B1365
13BC4SOFTWARELYS C:153 , SER C:155 , HOH C:2013BINDING SITE FOR RESIDUE SO4 C1365
14BC5SOFTWAREARG C:189 , ARG C:192 , TYR C:230 , HOH C:2016 , HOH C:2030 , THR D:255BINDING SITE FOR RESIDUE SO4 C1366
15BC6SOFTWAREARG C:72 , ARG C:150 , ARG C:174BINDING SITE FOR RESIDUE SO4 C1367
16BC7SOFTWARETHR D:65 , LYS D:68 , ARG D:69 , ARG D:72 , ARG D:150 , ARG D:174BINDING SITE FOR RESIDUE SO4 D1366
17BC8SOFTWARETHR A:255 , HOH A:2050 , ARG B:189 , ARG B:192 , TYR B:230BINDING SITE FOR RESIDUE SO4 B1366
18BC9SOFTWAREARG D:25 , LEU D:48BINDING SITE FOR RESIDUE SO4 D1367
19CC1SOFTWAREARG A:263 , ARG B:263 , SO4 C:1364BINDING SITE FOR RESIDUE SO4 A1366
20CC2SOFTWAREGLU A:239 , ALA A:267 , GLY A:268 , TYR A:269 , ARG D:228BINDING SITE FOR RESIDUE SO4 A1367

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UX9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UX9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UX9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UX9)

(-) Exons   (0, 0)

(no "Exon" information available for 4UX9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:343
                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeee..eeeeeeee....eeeeeee....eeeeeeee....hhhhhhhhhhhhhhhhhh.......eeeee...........eeeeee...eehhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee...............hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhhh..hhhhhhhhhh.......hhhhhhhhhhh.........hhhhhhhhhhhhh........hhhhhhhh..hhhhhhhhhhh..........hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ux9 A   8 NNFYSVEIGDSTFTVLKRYQNLKPIGSGAGIVCAAYDAILERNVAIKKLSPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTPYVVTRYYRAPEVILGMGYKENVDLWSVGCIMGEMVCHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINVWYDPSEAEAPPPKIPREHTIEEWKELIYKEVMDL 363
                                    17        27        38        48        58|       69        79        89        99       109       119       129       139       149       159       169       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334   ||  350       360   
                                                       36|                  58|                                                                                                                   178|                                                                                                                                                       338|                  
                                                        38                   60                                                                                                                    184                                                                                                                                                        345                  

Chain B from PDB  Type:PROTEIN  Length:327
                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeee..eeeeeeee..eeeeee....eeeeeeeee.hhhhhhhhhhhhhhhhhhhhh.......eeeee..........eeeeeee...eehhhhhh...hhhhhhhhhhhhhhhhhhhhh........hhh.eeee...eeee..............hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhhhh.hhhhhhhhhh.......hhhhhhhhhhh.....hhhhhhhhhhhhh..hhhhh.hhhhhhh...hhhhhhhhhhh.......hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ux9 B   8 NNFYSVEIGDSTFTVLKRYQNLKPIGSIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGPYVVTRYYRAPEVILGMGYKENVDLWSVGCIMGEMVCHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSLKASQARDLLSKMLVIDASKRISVDEALQHPYINVWYDPSEAEAPPPKIPKELIYKEVMD 362
                                    17        27      ||41        51        61        71        81        91       101       111       121       131       141       151       161       171     ||187       197       207       217       227       237       247       257       267       277      |291       301       311       321       331      |355       
                                                     34|                                                                                                                                       177|                                                                                                 284|                                              338|         
                                                      39                                                                                                                                        184                                                                                                  289                                               353         

Chain C from PDB  Type:PROTEIN  Length:333
                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeee..eeeeeeeee...eeeeeee....eeeeeeeee....hhhhhhhhhhhhhhhhhh.......eeeee..........eeeeeee...eehhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee.............hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhhh..hhhhhhhhhhh......hhhhhhhhhhh..hhhhhhhhhhhhh..hhhhh.hhhhhhh...hhhhhhhhhhh........hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ux9 C   8 NNFYSVEIGDSTFTVLKRYQNLKPIGSGQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGYVVTRYYRAPEVILGMGYKENVDLWSVGCIMGEMVCHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPLKASQARDLLSKMLVIDASKRISVDEALQHPYINVWYDPSEAEAPPPKIPHTIEEWKELIYKEVMDL 363
                                    17        27       |38        48        58        68        78        88        98       108       118       128       138       148       158       168       185       195       205       215       225       235       245       255       265       275     ||292       302       312       322       332     ||350       360   
                                                      35|                                                                                                                                         177|                                                                                             281|                                              338|                
                                                       37                                                                                                                                          185                                                                                              289                                               347                

Chain D from PDB  Type:PROTEIN  Length:344
                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..eeeeee..eeeeee..eeeeee....eeeeeee......hhhhhhhhhhhhhhhhhh.......eeeee............eeeee...eehhhhhh...hhhhhhhhhhhhhhhhhhhhh........hhh.eee.....eee.........................hhhhhh......hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhhh..hhhhhhhhhhh......hhhhhhhhhhh......hhhhhhhhhhhhh..hhhhh.hhhhhhhh..hhhhhhhhhhh.............hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ux9 D   9 NFYSVEIGDSTFTVLKRYQNLKPIIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDLWSVGCIMGEMVCHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINVWYDPSEAEAPPPKIPDDEREHTIEEWKELIYKEVMDLE 364
                                    18        28   ||   44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       287       297       307       317       327       337 ||    350       360    
                                                  32|                                                                                                                                                                                                                                                 283|                                                 339|                     
                                                   39                                                                                                                                                                                                                                                  287                                                  343                     

Chain F from PDB  Type:PROTEIN  Length:10
                                          
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .......... Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                 4ux9 F  39 PRPTLQLPLA  48
                                    48

Chain G from PDB  Type:PROTEIN  Length:8
                                        
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ........ Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                 4ux9 G  41 PTLQLPLA  48

Chain H from PDB  Type:PROTEIN  Length:12
                                            
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ............ Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 4ux9 H  37 QRPRPTLQLPLA  48
                                    46  

Chain I from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 4ux9 I  37 QRPRPQLPL  47
                                ||   
                               41|   
                                44   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UX9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UX9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UX9)

(-) Gene Ontology  (67, 83)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MK08_HUMAN | P459831ukh 1uki 2g01 2gmx 2h96 2no3 2xrw 2xs0 3elj 3o17 3o2m 3pze 3v3v 3vud 3vug 3vuh 3vui 3vuk 3vul 3vum 4awi 4e73 4g1w 4hys 4hyu 4izy 4l7f 4qtd 4yr8
        MP2K7_HUMAN | O147332dyl 3wzu 5b2k 5b2l 5b2m

(-) Related Entries Specified in the PDB File

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