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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN SOLUBLE ADENYLYL CYCLASE WITH ATP
 
Authors :  S. Kleinboelting, C. Steegborn
Date :  13 Jul 14  (Deposition) - 30 Jul 14  (Release) - 01 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Lyase, Atp Substrate (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Kleinbolting, J. Van Den Heuvel, C. Steegborn
Structural Analysis Of Human Soluble Adenylyl Cyclase And Crystal Structures Of Its Nucleotide Complexes - Implications For Cyclase Catalysis And Evolution.
Febs J. V. 281 4151 2014
PubMed-ID: 25040695  |  Reference-DOI: 10.1111/FEBS.12913

(-) Compounds

Molecule 1 - ADENYLATE CYCLASE TYPE 10
    ChainsA
    EC Number4.6.1.1
    EngineeredYES
    Expression SystemTRICHOPLUSIA NI
    Expression System Cell LineHIGH FIVE
    Expression System CommonCABBAGE LOOPER
    Expression System PlasmidPVL1392
    Expression System Taxid7111
    Expression System Vector TypeBACULOVIRUS
    FragmentCATALYTIC DOMAIN, RESIDUES 1-469
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsBETA-MERCAPTOETHANOL MODIFICATION AT RESIDUE CYS253
    SynonymAH-RELATED PROTEIN, ADENYLATE CYCLASE HOMOLOG, GERM CELL SOLUBLE ADENYLYL CYCLASE, HSAC, SAC, TESTICULAR SOLUBLE ADENYLYL CYCLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (3x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 6)

Asymmetric Unit (5, 6)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
3CME1Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
4GOL1Ligand/IonGLYCEROL
5NA1Ligand/IonSODIUM ION
Biological Unit 1 (4, 15)
No.NameCountTypeFull Name
1ACT6Ligand/IonACETATE ION
2ATP3Ligand/IonADENOSINE-5'-TRIPHOSPHATE
3CME3Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
4GOL3Ligand/IonGLYCEROL
5NA-1Ligand/IonSODIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:47 , ASP A:99 , ATP A:1471 , HOH A:2037 , HOH A:2073BINDING SITE FOR RESIDUE NA A1468
2AC2SOFTWARELYS A:95 , HIS A:164 , ASN A:333 , LYS A:334 , VAL A:335 , GOL A:1472 , HOH A:2069BINDING SITE FOR RESIDUE ACT A1469
3AC3SOFTWARELYS A:95 , LEU A:166 , VAL A:167 , ARG A:176 , PHE A:336 , HOH A:2095 , HOH A:2201BINDING SITE FOR RESIDUE ACT A1470
4AC4SOFTWAREASP A:47 , ILE A:48 , SER A:49 , GLY A:50 , PHE A:51 , THR A:52 , ALA A:97 , GLY A:98 , ASP A:99 , LYS A:144 , PHE A:336 , PHE A:338 , LEU A:345 , THR A:405 , VAL A:406 , ASN A:412 , ARG A:416 , NA A:1468 , HOH A:2038 , HOH A:2040 , HOH A:2072 , HOH A:2073 , HOH A:2168BINDING SITE FOR RESIDUE ATP A1471
5AC5SOFTWAREHIS A:19 , LYS A:95 , PHE A:165 , TYR A:268 , LYS A:334 , GLU A:403 , ACT A:1469 , HOH A:2009 , HOH A:2010 , HOH A:2069 , HOH A:2202BINDING SITE FOR RESIDUE GOL A1472

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4USW)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Arg A:33 -Pro A:34

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4USW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4USW)

(-) Exons   (0, 0)

(no "Exon" information available for 4USW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:458
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhh..hhhhhh........eeeeeeeeeeeeeeehhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..eeeeee..eeeeeee.hhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeeeeeeeeee....eeeeeehhhhhhhhhhhhhh....eeehhhhhhhh....eeeeee..eeeeeeeee......hhhhhhhhhhh......hhhhh...hhhhhh..hhhhhhhhhh..hhhhhhhhh...hhhhhheeeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee....eeeeeee....hhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeeeeeeeeeee..eeeeeeehhhhhhhhhhhhhh...eeehhhhhhhh..hhh.eee...............eee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4usw A   1 MNTPKEEFQDWPIVRIAAHLPDLIVYGHFSPERPFMDYFDGVLMFVDISGFTAMTEKFSSAMYMDRGAEQLVEILNYHISAIVEKVLIFGGDILKFAGDALLALWRVERKQLKNIITVVIKCSLEIHGLFLDIRVKIGLAAGHISMLVFGDETHSHFLVIGQAVDDVRLAQNMAQMNDVILSPNCWQLCDRSMIEIESVPDQRAVKVNFLKPPPNFNFDEFFTKCTTFMHYYPSGEHKNLLRLAcTLKPDPELEMSLQKYVMESILKQIDNKQLQGYLSELRPVTIVFVNLMFEDQDKAEEIGPAIQDAYMHITSVLKIFQGQINKVFMFDKGCSFLCVFGFGEKVPDELTHALECAMDIFDFCSQVHKIQTVSIGVASGIVFCGIVGHTVRHEYTVIGQKVNLAARMMMYYPGIVTCDSVTYNGSNLPAYFFKELPKKVMKGVADSGPLYQYWGRTE 467
                                    10        20        30        40        50        60        70        80        90       100       110       120       130|      148       158       168       178       188       198       208       218       228       238       248    |  258       268       278       288       298       308       318       328       338       348 ||    359       369       379       389       399       409       419       429       439       449       459        
                                                                                                                                                           130|                                                                                                               253-CME                                                                                          350|                                                                                                                   
                                                                                                                                                            139                                                                                                                                                                                                                 352                                                                                                                   

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4USW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4USW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4USW)

(-) Gene Ontology  (35, 35)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ADCYA_HUMAN | Q96PN64clf 4clk 4cll 4clp 4cls 4clt 4clu 4clw 4cly 4clz 4cm0 4cm2 4oya 4oyb 4oyi 4oym 4oyo 4oyp 4oyw 4oyx 4oyz 4oz2 4oz3 4ust 4usu 4usv 5d0r 5iv3 5iv4

(-) Related Entries Specified in the PDB File

4ust CRYSTAL STRUCTURE OF HUMAN SOLUBLE ADENYLYL CYCLASE WITH PYROPHOSPHATE RESULTING FROM SOAKING WITH GTP AND MAGNESIUM
4usu CRYSTAL STRUCTURE OF HUMAN SOLUBLE ADENYLYL CYCLASE IN COMPLEX WITH ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE
4usv CRYSTAL STRUCTURE OF HUMAN SOLUBLE ADENYLYL CYCLASE WITH PYROPHOSPHATE RESULTING FROM SOAKING WITH ATP AND CALCIUM